Stem-loop stu-MIR167b

Accession

MI0025968

Description

Solanum tuberosum stu-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

4 open access papers mention stu-MIR167b
(9 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAaacuuuucuauugcucuguacgaggaaagaucaGAUCAUGUGGCAGCAUCACC
(((.(((((((.((((((((...(((((((..(((...)))..)))))))...))))))))))))))).)))..

Structure

--   A       G        Aaa       au   u 
  UGA GCUGCCA CAUGAUCU   cuuuucu  ugc  
  ||| ||||||| ||||||||   |||||||  ||| c
  ACU CGACGGU GUACUAGa   gaaagga  aug  
CC   A       -        cua       gc   u 

Annotation confidence Not enough data

Genome context

JH137901.1: 1256041-1256114 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR167b

Mature stu-miR167b-5p

• Accession: MIMAT0031305
• Description: Solanum tuberosum stu-miR167b-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR167b-3p

• Accession: MIMAT0031306
• Description: Solanum tuberosum stu-miR167b-3p mature miRNA
• Sequence: 55 - GAUCAUGUGGCAGCAUCACC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233