Stem-loop stu-MIR156f

Accession

MI0025991

Description

Solanum tuberosum stu-MIR156f precursor miRNA

Literature search

9 open access papers mention stu-MIR156f
(22 sentences)

Sequence

CUGACAGAAGAGAGUGAGCAuacacauauaauuauauaaauauuuuuacuuaauuuucuugauauauauuguauauauaauuuugcgagugCUCACUUCUCUUUCUGUCAAUC
.((((((((((((((((((((.(.((...(((((((((.(((.......((((.....)))).......))).))))))))).)).).)))))))).)))).))))))))...

Structure

--C        -    -        a a  uau         a   uuuuuac    u 
   UGACAGAA GAGA GUGAGCAu c ca   aauuauaua aua       uuaa u
   |||||||| |||| |||||||| | ||   ||||||||| |||       |||| u
   ACUGUCUU CUCU CACUCgug g gu   uuaauauau ugu       aguu u
CUA        U    U        a c  --u         a   uauauau    c 

Annotation confidence Not enough data

Genome context

JH137904.1: 1311175-1311287 [+]

Mature stu-miR156f-5p

• Accession: MIMAT0031347
• Description: Solanum tuberosum stu-miR156f-5p mature miRNA
• Sequence: 1 - CUGACAGAAGAGAGUGAGCA - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR156f-3p

• Accession: MIMAT0031348
• Description: Solanum tuberosum stu-miR156f-3p mature miRNA
• Sequence: 92 - CUCACUUCUCUUUCUGUCAAUC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233