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mir-148 family (RF00248)

Summary
The expression of miR-148 has been demonstrated in human (MIR:MI0000253), mouse (MIR:MI0000550), rat (MIR:MI0000616) and zebrafish (MIR:MI0002015) [1,2,3]. miR-148 has also been predicted in chicken (MIR:MI0001189). These predicted hairpin precursor sequence are related to those of mir-152, which has been expressed in mouse (MIR:MI0000174) and is predicted in human (MIR:MI0000462) [1]. The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 3' arm of the hairpin.

There are 70 hairpins in the mir-148 family

Name Accession RPM Chromosome Start End Strand Confidence
mmu-mir-152 MI0000174 2208 11 96741219 96741291 + High
hsa-mir-148a MI0000253 13144 chr7 25949919 25949986 - High
hsa-mir-152 MI0000462 813 chr17 48037161 48037247 - High
mmu-mir-148a MI0000550 4983 6 51246792 51246890 - High
rno-mir-148b MI0000616 2002 chr7 144912038 144912134 + High
mmu-mir-148b MI0000617 537 15 103193552 103193648 + High
hsa-mir-148b MI0000811 1329 chr12 54337216 54337314 + High
rno-mir-152 MI0000921 100 chr10 84719319 84719403 + High
gga-mir-148a MI0001189 8720 2 32024642 32024709 - High
dre-mir-148 MI0002015 553 chr9 1644683 1644761 - High
dre-mir-152 MI0002017 264 chr3 24095957 24096036 + High
ssc-mir-148a MI0002418 1113 chr18 51216035 51216102 + High
fru-mir-148 MI0003277 - ref|NC_042285.1| 19062015 19062093 - High
tni-mir-148 MI0003278 - 2 13327072 13327137 - High
fru-mir-152 MI0003467 - ref|NC_042289.1| 2251329 2251399 + High
tni-mir-152 MI0003468 - Un_random 5385288 5385372 - High
bta-mir-148a MI0004737 20563 4 69949480 69949547 + High
xtr-mir-148b MI0004845 - 2 145583569 145583665 - High
xtr-mir-148a MI0004905 - 6 41567024 41567109 - High
bta-mir-148b MI0005030 279 5 25734105 25734194 - High
mdo-mir-152 MI0005306 649 ref|NC_077228.1| 199489717 199489789 - High
oan-mir-148 MI0006868 11922 8 56269367 56269450 + High
mml-mir-148a MI0007638 4203 3 89189901 89189968 + High
mml-mir-148b MI0007639 864 11 53951380 53951478 + High
mml-mir-152 MI0007643 775 16 48770697 48770783 + High
cfa-mir-148a MI0008018 - 14 39240693 39240752 - High
cfa-mir-148b MI0008069 - 27 972110 972170 - High
cfa-mir-152 MI0008162 - 9 25128568 25128626 - High
ptr-mir-148a MI0008547 - chr7 25118495 25118561 - High
ptr-mir-148b MI0008548 - chr12 35406209 35406306 - High
ptr-mir-152 MI0008552 - chr17 9802748 9802833 + -
bta-mir-152 MI0009748 219 19 38444475 38444560 + High
mdo-mir-148 MI0012493 1947 ref|NC_077234.2| 311158216 311158283 + High
eca-mir-148a MI0012689 11345 4 57356762 57356829 - High
eca-mir-148b MI0012724 219 6 72050081 72050163 + High
ssc-mir-152 MI0013104 1144 chr12 24289536 24289615 - High
ssc-mir-148b MI0013118 510 chr5 20388191 20388270 + High
tgu-mir-148a MI0013693 - chr2 52006663 52006774 - -
ppy-mir-148a MI0014837 - chr7 58508523 58508590 + -
ppy-mir-148b MI0014838 - chr12 54119436 54119534 + -
pma-mir-152a MI0017083 - ref|NC_046087.1| 12147442 12147533 + -
pma-mir-152b-1 MI0017084 - ref|NC_046070.1| 1713910 1713998 + -
aca-mir-148a MI0018759 - chr6 31781707 31781799 - High
aca-mir-148b MI0018760 - chr2 71202707 71202803 - High
ola-mir-152 MI0019458 - 8 24625017 24625117 + High
ola-mir-148 MI0019536 - 21 24768738 24768838 + High
cgr-mir-148b MI0020410 1261 JH001354.1 427 504 + High
cgr-mir-152 MI0020413 183 JH000166.1 680189 680266 + High
ggo-mir-152 MI0020646 - chr5 35457302 35457411 + -
ggo-mir-148b MI0020655 - chr12 31822817 31822925 - High
ggo-mir-148a MI0020688 - chr7 25979331 25979441 - -
ppy-mir-152 MI0020904 - NW_002963091.1 970641 970749 - -
ccr-mir-148 MI0023332 - None None High
ipu-mir-148 MI0024514 - None None -
ipu-mir-152 MI0024516 - None None -
oar-mir-148a MI0025254 9640 chr4 69902133 69902200 + High
oar-mir-152 MI0025256 3387 None None -
ssa-mir-148a MI0026513 - None None High
ssa-mir-148b MI0026514 - None None High
ssa-mir-152 MI0026516 - None None High
efu-mir-148 MI0028657 - JH977623.1 30756270 30756352 + High
efu-mir-152 MI0028836 - JH977703.1 3487495 3487577 + High
rno-mir-148a MI0030350 38889 chr4 81013269 81013365 - High
chi-mir-148a MI0030636 - chr4 71633508 71633592 + High
chi-mir-148b MI0030637 - chr5 26340976 26341084 - High
tch-mir-148b MI0031193 - KB367542.1 1519664 1519724 + High
tch-mir-152 MI0031205 - KB364974.1 1028787 1028845 - High
tch-mir-148a MI0031281 - KB360769.1 1015636 1015695 + High
oha-mir-148a MI0031361 - AZIM01002564.1 331423 331493 + -
oha-mir-148b MI0031362 - AZIM01000468.1 154297 154391 - -



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