Stem-loop eca-mir-148a

Accession

MI0012689

Description

Equus caballus eca-mir-148a precursor miRNA

Literature search

10 open access papers mention eca-mir-148a
(17 sentences)

Sequence

13847028 reads, 15523.0 reads per million, 239 experiments

gaggcAAAGUUCUGAGACACUCCGACUcugaauaugauagaagUCAGUGCACUACAGAACUUUGUcuc
((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))

Structure

              -  -A    CC    -   aa 
gaggcAAAGUUCUG AG  CACU  GACU cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 

Annotation confidence High

Genome context

4: 57356762-57356829 [-]

Mature eca-miR-148a-5p

• Accession: MIMAT0061087
• Description: Equus caballus eca-miR-148a-5p mature miRNA
• Sequence: 6 - AAAGUUCUGAGACACUCCGACU - 27
• Evidence: not_experimental

Mature eca-miR-148a-3p

• Accession: MIMAT0012935
• Description: Equus caballus eca-miR-148a-3p mature miRNA
• Sequence: 44 - UCAGUGCACUACAGAACUUUGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131