Stem-loop ssc-mir-148b

Accession

MI0013118

Description

Sus scrofa ssc-mir-148b precursor miRNA

Literature search

14 open access papers mention ssc-mir-148b
(30 sentences)

Sequence

1047 reads, 317 reads per million, 14 experiments

auuugagguGAAGUUCUGUUAUACACUCAGGCuguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcu
.((((((((((((((((((.((.((((..((((.............)))))))).)).))))))))))))))))))....

Structure

---a                  U  A    CA    guggc 
    uuugagguGAAGUUCUGU AU CACU  GGCu     u
    |||||||||||||||||| || ||||  ||||     c
    aagcucUGUUUCAAGACA UA GUGA  CUga     u
ucga                  C  C    --    aaguc 

Annotation confidence Not enough data

Genome context

chr5: 20388191-20388270 [+]

Mature ssc-miR-148b-3p

• Accession: MIMAT0013901
• Description: Sus scrofa ssc-miR-148b-3p mature miRNA
• Sequence: 49 - UCAGUGCAUCACAGAACUUUGU - 70
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-148b-5p

• Accession: MIMAT0022955
• Description: Sus scrofa ssc-miR-148b-5p mature miRNA
• Sequence: 10 - GAAGUUCUGUUAUACACUCAGGC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100