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Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus |
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|---|---|
| PubMed ID | 21699734 |
| Authors | Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M |
| Journal | BMC Genomics |
| Volume | 12 |
| Pages | 328 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| isc-mir-5305 | MI0018484 | None | ref|NW_024609838.1| | 87221037 | 87221140 | + | - |
| isc-mir-5306 | MI0018485 | None | ref|NW_024609835.1| | 33544646 | 33544755 | + | - |
| isc-mir-5307 | MI0018486 | None | ref|NW_024609836.1| | 71439519 | 71439628 | + | - |
| isc-mir-5308 | MI0018487 | None | ref|NW_024609835.1| | 64049665 | 64049769 | + | - |
| isc-mir-5309 | MI0018488 | None | ref|NW_024609881.1| | 79671595 | 79671703 | - | - |
| isc-mir-3931 | MI0018489 | None | ref|NW_024609868.1| | 81496381 | 81496485 | - | - |
| isc-mir-5310 | MI0018490 | None | ref|NW_024609837.1| | 59271429 | 59271538 | - | - |
| isc-mir-5311 | MI0018491 | None | ref|NW_024609857.1| | 31517889 | 31517998 | + | - |
| isc-mir-5312 | MI0018492 | None | ref|NW_024609884.1| | 74342363 | 74342468 | + | - |
| isc-mir-5313 | MI0018493 | None | ref|NW_024609982.1| | 124497 | 124605 | - | - |
| isc-mir-5314 | MI0018494 | None | ref|NW_024609857.1| | 189354355 | 189354457 | - | - |
| isc-mir-5315 | MI0018495 | None | ref|NW_024609882.1| | 31125345 | 31125447 | + | - |
| rmi-mir-5316a | MI0018496 | None | None | None | - | ||
| rmi-mir-5316b | MI0018497 | None | None | None | - | ||
| rmi-mir-5317a | MI0018498 | None | None | None | - | ||
| rmi-mir-5318 | MI0018499 | None | None | None | - | ||
| rmi-mir-5317b | MI0018500 | None | None | None | - | ||
| rmi-mir-5319 | MI0018501 | None | None | None | - | ||
| rmi-mir-5320 | MI0018502 | None | None | None | - | ||
| rmi-mir-5321 | MI0018503 | None | None | None | - | ||
| rmi-mir-5322 | MI0018504 | None | None | None | - | ||
| rmi-mir-5323 | MI0018505 | None | None | None | - | ||
| rmi-mir-5324 | MI0018506 | None | None | None | - | ||
| rmi-mir-5325 | MI0018507 | None | None | None | - | ||
| rmi-mir-5326 | MI0018508 | None | None | None | - | ||
| rmi-mir-5327 | MI0018509 | None | None | None | - | ||
| rmi-mir-5328 | MI0018510 | None | None | None | - | ||
| rmi-mir-5329 | MI0018511 | None | None | None | - | ||
| rmi-mir-5330 | MI0018512 | None | None | None | - | ||
| rmi-mir-5331 | MI0018513 | None | None | None | - | ||
| rmi-mir-5332 | MI0018514 | None | None | None | - | ||
| rmi-mir-5333 | MI0018515 | None | None | None | - | ||
| rmi-mir-5334 | MI0018516 | None | None | None | - | ||
| rmi-mir-5335 | MI0018517 | None | None | None | - | ||
| rmi-mir-5336 | MI0018518 | None | None | None | - | ||
| rmi-mir-5341 | MI0018523 | None | None | None | - | ||
| bta-let-7f-2 | MI0004734 | 15341 | X | 90986550 | 90986632 | - | High |
| bta-mir-125a | MI0004752 | 2184 | 18 | 57689557 | 57689642 | + | High |
| bta-mir-125b-1 | MI0004753 | 1129 | 15 | 32763901 | 32763988 | - | High |
| bta-mir-10a | MI0005007 | 29380 | 19 | 37912303 | 37912411 | + | High |
| bta-mir-92a-2 | MI0005024 | 4598 | X | 17975659 | 17975726 | - | High |
| bta-let-7d | MI0005026 | 807 | 8 | 85452957 | 85453043 | + | High |
| bta-mir-124a-1 | MI0005027 | 13 | 8 | 9301909 | 9301993 | + | High |
| bta-let-7g | MI0005051 | 2040 | 22 | 48636407 | 48636489 | + | High |
| bta-mir-10b | MI0005052 | 37824 | 2 | 20762743 | 20762841 | - | High |
| bta-mir-7-3 | MI0005056 | 93 | 7 | 19372417 | 19372498 | - | - |
| bta-let-7a-1 | MI0005057 | 11865 | 8 | 85450397 | 85450476 | + | High |
| bta-let-7f-1 | MI0005062 | 15133 | 8 | 85450750 | 85450836 | + | High |
| bta-let-7i | MI0005065 | 3806 | 5 | 50983054 | 50983137 | - | High |
| bta-let-7a-2 | MI0005451 | 11827 | 15 | 32812703 | 32812774 | - | High |
| bta-let-7a-3 | MI0005452 | 11878 | 5 | 116408410 | 116408483 | + | High |
| bta-let-7b | MI0005453 | 4232 | 5 | 116409210 | 116409290 | + | High |
| bta-let-7c | MI0005454 | 1399 | 1 | 20434617 | 20434700 | - | High |
| bta-let-7e | MI0005455 | 535 | 18 | 57689058 | 57689136 | + | High |
| bta-mir-125b-2 | MI0005457 | 1232 | 1 | 20385501 | 20385585 | - | High |
| bta-mir-1-2 | MI0009718 | 574 | 24 | 34453372 | 34453456 | + | High |
| bta-mir-1-1 | MI0009719 | 574 | 13 | 54745908 | 54745983 | - | High |
| bta-mir-100 | MI0009720 | 673 | 15 | 32818528 | 32818603 | - | High |
| bta-mir-124a-2 | MI0009725 | 13 | 14 | 29124356 | 29124466 | + | High |
| bta-mir-124b | MI0009726 | 13 | 13 | 54355340 | 54355426 | - | High |
| bta-mir-133a-2 | MI0009732 | 327 | 24 | 34456691 | 34456777 | + | High |
| bta-mir-133a-1 | MI0009733 | 326 | 13 | 54735656 | 54735750 | - | High |
| bta-mir-133b | MI0009734 | 15 | 23 | 24571304 | 24571387 | + | High |
| bta-mir-137 | MI0009740 | 9 | 3 | 45241090 | 45241191 | + | - |
| bta-mir-153-1 | MI0009749 | 14 | 2 | 107240951 | 107241040 | - | High |
| bta-mir-153-2 | MI0009750 | 16 | 4 | 118753582 | 118753668 | - | High |
| bta-mir-190a | MI0009762 | 22 | 10 | 47265558 | 47265642 | - | High |
| bta-mir-190b | MI0009763 | 5 | 3 | 16316832 | 16316910 | + | - |
| bta-mir-219-1 | MI0009781 | 3 | 11 | 98985275 | 98985370 | - | High |
| bta-mir-33a | MI0009807 | 65 | 5 | 112884574 | 112884642 | + | High |
| bta-mir-33b | MI0009808 | 45 | 19 | 34647548 | 34647641 | + | High |
| bta-mir-92a-1 | MI0009905 | 5255 | 12 | 65690118 | 65690195 | + | High |
| bta-mir-92b | MI0009906 | 396 | 3 | 15425799 | 15425894 | - | High |
| bta-mir-96 | MI0009911 | 130 | 4 | 93595920 | 93596022 | - | High |
| isc-mir-2001 | MI0010250 | None | ref|NW_024609884.1| | 42500075 | 42500152 | + | - |
| bta-mir-7-2 | MI0010462 | 181 | 8 | 77219242 | 77219350 | - | High |
| bta-mir-7-1 | MI0010471 | 99 | 21 | 19582936 | 19583033 | + | High |
| isc-bantam | MI0012259 | None | ref|NW_024609881.1| | 54625023 | 54625123 | + | - |
| isc-let-7 | MI0012260 | None | ref|NW_024609835.1| | 81482501 | 81482600 | + | - |
| isc-mir-1 | MI0012261 | None | ref|NW_024609883.1| | 32135806 | 32135897 | + | - |
| isc-mir-10 | MI0012262 | None | ref|NW_024609835.1| | 47870428 | 47870499 | + | - |
| isc-mir-100 | MI0012263 | None | ref|NW_024609835.1| | 81421633 | 81421733 | + | - |
| isc-mir-12 | MI0012264 | None | ref|NW_024609836.1| | 71440097 | 71440197 | + | - |
| isc-mir-124 | MI0012265 | None | ref|NW_024609883.1| | 45751368 | 45751468 | - | - |
| isc-mir-133 | MI0012266 | None | ref|NW_024609883.1| | 32312014 | 32312114 | + | - |
| isc-mir-137 | MI0012267 | None | ref|NW_024609838.1| | 2074344 | 2074436 | + | - |
| isc-mir-153 | MI0012268 | None | ref|NW_024609880.1| | 61630761 | 61630855 | - | - |
| isc-mir-219 | MI0012270 | None | ref|NW_024609868.1| | 46492172 | 46492272 | + | - |
| isc-mir-252b | MI0012271 | None | ref|NW_024609884.1| | 42599627 | 42599723 | + | - |
| isc-mir-263a | MI0012272 | None | ref|NW_024609883.1| | 66587812 | 66587911 | - | - |
| isc-mir-275 | MI0012273 | None | ref|NW_024609835.1| | 9540822 | 9540922 | - | - |
| isc-mir-279 | MI0012274 | None | ref|NW_024609882.1| | 21276930 | 21277017 | + | - |
| isc-mir-285 | MI0012275 | None | ref|NW_024609883.1| | 109400953 | 109401048 | + | - |
| isc-mir-315 | MI0012278 | None | ref|NW_024609883.1| | 67654326 | 67654426 | + | - |
| isc-mir-317 | MI0012279 | None | ref|NW_024609835.1| | 44980112 | 44980212 | - | - |
| isc-mir-307 | MI0012281 | None | ref|NW_024609846.1| | 209993222 | 209993322 | - | - |
| isc-mir-7 | MI0012282 | None | ref|NW_024609837.1| | 86510877 | 86510956 | + | - |
| isc-mir-71 | MI0012283 | None | ref|NW_024609884.1| | 3130184 | 3130284 | + | - |
| isc-mir-79 | MI0012285 | None | ref|NW_024609837.1| | 34341047 | 34341147 | + | - |
| isc-mir-8 | MI0012286 | None | ref|NW_024609846.1| | 79744137 | 79744230 | - | - |
| isc-mir-87 | MI0012287 | None | ref|NW_024609880.1| | 72740038 | 72740138 | - | - |
| isc-mir-96 | MI0012288 | None | ref|NW_024609883.1| | 66568255 | 66568355 | - | - |
| isc-mir-993 | MI0012289 | None | ref|NW_024609835.1| | 48437527 | 48437618 | - | - |
| isc-mir-305 | MI0016444 | None | ref|NW_024609835.1| | 9524402 | 9524491 | - | - |
| bta-mir-133c | MI0025193 | None | 13 | 54735653 | 54735746 | + | Medium |
| bta-mir-219-2 | MI0025539 | 13 | 23 | 7394820 | 7394882 | + | High |
| bta-mir-219b | MI0032929 | 20 | 11 | 98985277 | 98985364 | + | High |