Stem-loop bta-mir-96

Accession

MI0009911

Description

Bos taurus bta-mir-96 precursor miRNA mir-96

Gene
family

RF00669; mir-96

Literature search

90 open access papers mention bta-mir-96
(453 sentences)

Sequence

102475 reads, 59.0 reads per million, 286 experiments

ccacuaccgucugcuuggccgacUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagCAAUCAUGUGCAGUGCCAAUAUgggaaaagcaggaugc
.......(((((((((..((.(..((((((((.((((((..(((((((((......)))...))))))..))))))))))))))..).))..))))).)))).

Structure

ccacuac    -     gg  g cU        A      UU      ---   uc 
       cguc ugcuu  cc a  UUGGCACU GCACAU  UUGCUu   gug  u
       |||| |||||  || |  |||||||| ||||||  ||||||   |||   
       guag acgaa  gg U  AACCGUGA CGUGUA  AACgag   cgc  c
------c    g     aa  g AU        -      CU      ucu   cu 

Annotation confidence High

Genome context

4: 93595920-93596022 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-96

Mature bta-miR-96-5p

• Accession: MIMAT0009388
• Description: Bos taurus bta-miR-96-5p mature miRNA
• Sequence: 24 - UUUGGCACUAGCACAUUUUUGCU - 46
• Evidence: not_experimental

Mature bta-miR-96-3p

• Accession: MIMAT0050894
• Description: Bos taurus bta-miR-96-3p mature miRNA
• Sequence: 66 - CAAUCAUGUGCAGUGCCAAUAU - 87
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125