miRBase entry: isc-mir-305

Stem-loop isc-mir-305


Accession
MI0016444
Description
Ixodes scapularis isc-mir-305 precursor miRNA

Literature search
1 open access papers mention isc-mir-305
(2 sentences)

Sequence

cagucacuaguuaAUUGUACUUCAUCAGGUGCUCUggaguucgguucgcacaaccaggcaucuuuuggagugcaaaugauaaguggcacg
..((((((.((((.((((((((((..((((((.((((.((.((...)).))..))))))))))..)))))))))).)))).))))))...

Structure
-ca      a    A          UC      U    -a  u  g 
   gucacu guua UUGUACUUCA  AGGUGC CUgg  gu cg  
   |||||| |||| ||||||||||  |||||| ||||  || || u
   cgguga uagu aacgugaggu  ucuacg gacc  ca gc  
gca      a    a          uu      -    aa  c  u 


Annotation confidence Not enough data
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Genome context
DS945001: 228261-228350 [-]

Database links

Mature isc-miR-305

Accession MIMAT0018920
Description Ixodes scapularis isc-miR-305 mature miRNA
Sequence 14 - AUUGUACUUCAUCAGGUGCUCU - 35
Evidence not_experimental

References

  1. PubMed ID: 20702459
    A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
    "Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ"
    "Proc Biol Sci (2011) 278:298-306