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Discovery of barley miRNAs through deep sequencing of short reads |
|
|---|---|
| PubMed ID | 21352554 |
| Authors | Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U |
| Journal | BMC Genomics |
| Volume | 12 |
| Pages | 129 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| hvu-MIR171 | MI0016461 | None | None | None | - | ||
| hvu-MIR166b | MI0016742 | None | None | None | - | ||
| hvu-MIR444a | MI0016745 | None | None | None | - | ||
| hvu-MIR399 | MI0017933 | None | None | None | - | ||
| hvu-MIR444b | MI0017934 | None | None | None | - | ||
| hvu-MIR5048a | MI0017935 | None | None | None | - | ||
| hvu-MIR5049a | MI0017936 | None | None | None | - | ||
| hvu-MIR5050 | MI0017937 | None | None | None | - | ||
| hvu-MIR5051 | MI0017938 | None | None | None | - | ||
| hvu-MIR5052 | MI0017939 | None | None | None | - | ||
| hvu-MIR5053 | MI0017940 | None | None | None | - | ||
| osa-MIR5071 | MI0017942 | None | Chr8 | 4114004 | 4114102 | - | - |
| osa-MIR5072 | MI0017943 | 52 | Chr6 | 17458695 | 17458770 | - | - |
| bdi-MIR5055 | MI0017944 | None | 3 | 13969508 | 13969748 | + | - |
| bdi-MIR5056 | MI0017945 | None | 2 | 20794717 | 20794860 | + | - |
| osa-MIR5073 | MI0017946 | 0 | Chr8 | 19020495 | 19020601 | + | - |
| bdi-MIR5057 | MI0017947 | None | 4 | 10594352 | 10594427 | + | - |
| bdi-MIR5058 | MI0017948 | None | 4 | 31543610 | 31543707 | + | - |
| tae-MIR5086 | MI0017949 | 9 | 1D | 106288641 | 106288771 | - | - |
| osa-MIR5074 | MI0017950 | 1 | Chr12 | 12674516 | 12674651 | + | - |
| bdi-MIR5059 | MI0017951 | None | 1 | 55078377 | 55078452 | + | - |
| osa-MIR5075 | MI0017952 | 6 | Chr11 | 7878336 | 7878823 | - | - |
| bdi-MIR5060 | MI0017953 | None | 5 | 10072906 | 10073211 | - | - |
| bdi-MIR5061 | MI0017954 | None | 1 | 61734973 | 61735092 | + | - |
| osa-MIR5076 | MI0017955 | 17 | Chr1 | 43208622 | 43208850 | - | - |
| bdi-MIR1878 | MI0017956 | None | 4 | 37301958 | 37302055 | + | - |
| tae-MIR5084 | MI0017957 | 71 | 1A | 219935406 | 219935534 | + | Low |
| tae-MIR5085 | MI0017958 | 5 | 7B | 228951380 | 228951507 | + | - |
| bdi-MIR5062a | MI0017959 | None | 1 | 24013988 | 24014136 | - | - |
| bdi-MIR5063 | MI0017961 | None | 1 | 34157655 | 34157732 | - | - |
| bdi-MIR5064 | MI0017962 | None | 2 | 38751727 | 38752100 | + | - |
| bdi-MIR5065 | MI0017963 | None | 3 | 59067940 | 59068130 | - | - |
| bdi-MIR5066 | MI0017964 | None | 1 | 55649102 | 55649202 | - | - |
| osa-MIR5077 | MI0017965 | 0 | Chr3 | 14094752 | 14094842 | + | - |
| osa-MIR5078 | MI0017966 | 100 | Chr5 | 21907862 | 21908296 | - | - |
| bdi-MIR5067 | MI0017967 | None | 1 | 20615436 | 20615521 | + | - |
| bdi-MIR5068 | MI0017968 | None | 3 | 25092263 | 25092338 | + | - |
| osa-MIR5079a | MI0017969 | None | Chr6 | 28181408 | 28181813 | + | - |
| osa-MIR5080 | MI0017970 | 0 | Chr10 | 2322020 | 2322108 | - | - |
| bdi-MIR5069 | MI0017971 | None | 4 | 5340628 | 5340708 | - | - |
| osa-MIR5081 | MI0017972 | 27 | Chr7 | 16888 | 17137 | - | - |
| osa-MIR5082 | MI0017973 | 6 | Chr11 | 1286146 | 1286686 | + | - |
| osa-MIR5083 | MI0017974 | 45 | Chr1 | 41010573 | 41010952 | - | - |
| bdi-MIR5070 | MI0017975 | None | 2 | 35045123 | 35045246 | + | - |
| bdi-MIR5054 | MI0018238 | None | 3 | 21161853 | 21161949 | + | - |
| bdi-MIR408 | MI0017941 | None | None | None | - | ||
| osa-MIR5079b | MI0026007 | None | Chr10 | 10915695 | 10916100 | - | - |
| bdi-MIR5062b | MI0017960 | None | None | None | - | ||
| osa-MIR156a | MI0000653 | 257272 | Chr1 | 22524147 | 22524246 | - | - |
| osa-MIR156b | MI0000654 | 258339 | Chr1 | 4666341 | 4666516 | + | High |
| osa-MIR156c | MI0000655 | 258287 | Chr1 | 4665975 | 4666123 | + | High |
| osa-MIR156d | MI0000656 | 375099 | Chr2 | 4512884 | 4513012 | - | - |
| osa-MIR156e | MI0000657 | 257257 | Chr4 | 25026327 | 25026430 | - | - |
| osa-MIR156f | MI0000658 | 374943 | Chr8 | 21478230 | 21478415 | + | High |
| osa-MIR156g | MI0000659 | 258296 | Chr9 | 15065253 | 15065368 | + | High |
| osa-MIR156h | MI0000660 | 374943 | Chr8 | 21491232 | 21491417 | + | High |
| osa-MIR156i | MI0000661 | 257274 | Chr2 | 24119995 | 24120084 | - | - |
| osa-MIR156j | MI0000662 | 374978 | Chr6 | 26554795 | 26554959 | + | High |
| osa-MIR162a | MI0000667 | 361 | Chr2 | 23605799 | 23605969 | + | - |
| osa-MIR164a | MI0000668 | 1892 | Chr7 | 28523341 | 28523496 | - | - |
| osa-MIR166a | MI0000670 | 19323 | Chr10 | 19987135 | 19987279 | + | High |
| osa-MIR166b | MI0000671 | 19371 | Chr6 | 30327084 | 30327289 | - | High |
| osa-MIR166c | MI0000672 | 19151 | Chr3 | 3487788 | 3487912 | + | High |
| osa-MIR166d | MI0000673 | 19377 | Chr2 | 26130059 | 26130183 | + | High |
| osa-MIR166e | MI0000674 | 36 | Chr3 | 765724 | 765860 | + | - |
| osa-MIR166f | MI0000675 | 19281 | Chr10 | 14483290 | 14483396 | - | - |
| osa-MIR167a | MI0000676 | 55831 | Chr12 | 25476808 | 25476948 | + | High |
| osa-MIR167b | MI0000677 | 55818 | Chr3 | 30546928 | 30547090 | - | - |
| osa-MIR167c | MI0000678 | 55830 | Chr3 | 33130619 | 33130781 | + | - |
| osa-MIR394 | MI0001027 | 78 | Chr2 | 27148154 | 27148263 | + | - |
| osa-MIR395b | MI0001028 | 31 | Chr4 | 31805334 | 31805419 | - | - |
| osa-MIR395d | MI0001029 | 22 | Chr4 | 31805055 | 31805142 | - | - |
| osa-MIR395e | MI0001030 | 20 | Chr4 | 31804912 | 31804999 | - | - |
| osa-MIR395g | MI0001031 | 19 | Chr4 | 31804633 | 31804718 | - | - |
| osa-MIR395h | MI0001032 | 20 | Chr8 | 3299144 | 3299255 | + | - |
| osa-MIR395i | MI0001033 | 19 | Chr8 | 3299319 | 3299417 | + | - |
| osa-MIR395j | MI0001034 | 20 | Chr8 | 3299479 | 3299590 | + | - |
| osa-MIR395k | MI0001035 | 19 | Chr8 | 3299652 | 3299750 | + | - |
| osa-MIR395l | MI0001036 | 17 | Chr8 | 3299997 | 3300090 | + | - |
| osa-MIR395s | MI0001037 | 22 | Chr4 | 32622943 | 32623028 | + | - |
| osa-MIR395t | MI0001038 | 0 | Chr9 | 6607353 | 6607495 | - | - |
| osa-MIR395c | MI0001041 | 10 | Chr4 | 31805193 | 31805281 | - | - |
| osa-MIR395a | MI0001042 | 0 | Chr4 | 31805494 | 31805635 | - | - |
| osa-MIR395f | MI0001043 | 0 | Chr4 | 31804774 | 31804855 | - | - |
| osa-MIR395u | MI0001044 | 0 | Chr9 | 6606701 | 6606786 | - | - |
| osa-MIR396a | MI0001046 | 97 | Chr2 | 34280384 | 34280537 | + | - |
| osa-MIR396b | MI0001047 | 100 | Chr6 | 3669649 | 3669764 | + | - |
| osa-MIR396c | MI0001048 | 280 | Chr2 | 34287873 | 34288013 | - | High |
| osa-MIR397a | MI0001049 | 361 | Chr6 | 28489785 | 28489898 | + | - |
| osa-MIR397b | MI0001050 | 315 | Chr2 | 3280781 | 3280898 | - | - |
| osa-MIR398a | MI0001051 | 11 | Chr10 | 9216250 | 9216364 | - | - |
| osa-MIR398b | MI0001052 | 59 | Chr7 | 14598617 | 14598704 | - | - |
| osa-MIR399a | MI0001053 | 0 | Chr1 | 30478636 | 30478784 | + | - |
| osa-MIR399b | MI0001054 | 1 | Chr2 | 7664026 | 7664122 | - | - |
| osa-MIR399c | MI0001055 | 0 | Chr5 | 26305938 | 26306047 | - | - |
| osa-MIR399d | MI0001056 | 10 | Chr6 | 1561789 | 1562074 | + | - |
| osa-MIR399e | MI0001057 | 0 | Chr1 | 30477612 | 30477729 | - | - |
| osa-MIR399f | MI0001058 | 0 | Chr6 | 20888631 | 20888747 | - | - |
| osa-MIR399g | MI0001059 | 0 | Chr2 | 7675284 | 7675402 | + | - |
| osa-MIR399h | MI0001060 | 1 | Chr5 | 26307936 | 26308034 | + | - |
| osa-MIR399i | MI0001061 | 0 | Chr2 | 7650684 | 7650799 | + | - |
| osa-MIR399j | MI0001062 | 5 | Chr4 | 28873121 | 28873226 | + | - |
| osa-MIR399k | MI0001063 | None | Chr5 | 26311253 | 26311358 | + | - |
| osa-MIR156k | MI0001090 | 871 | Chr9 | 18289107 | 18289212 | - | - |
| osa-MIR156l | MI0001091 | 10220 | Chr5 | 5230609 | 5230764 | + | High |
| osa-MIR159b | MI0001093 | 1371 | Chr1 | 1215030 | 1215217 | + | - |
| osa-MIR162b | MI0001102 | 47 | Chr4 | 24405899 | 24406032 | + | - |
| osa-MIR166k | MI0001107 | 1477 | Chr2 | 32435003 | 32435129 | - | High |
| osa-MIR166l | MI0001108 | 1522 | Chr9 | 16951817 | 16951933 | + | High |
| osa-MIR167d | MI0001109 | 56522 | Chr7 | 4166295 | 4166404 | - | - |
| osa-MIR167e | MI0001110 | 56102 | Chr2 | 3742241 | 3742513 | - | High |
| osa-MIR167f | MI0001111 | 56422 | Chr10 | 14723044 | 14723156 | - | - |
| osa-MIR167g | MI0001112 | 56505 | Chr3 | 3347682 | 3347763 | + | High |
| osa-MIR167h | MI0001113 | 56418 | Chr12 | 25480618 | 25480737 | + | - |
| osa-MIR167i | MI0001114 | 56192 | Chr6 | 27674749 | 27674949 | + | High |
| osa-MIR168a | MI0001115 | 282915 | Chr2 | 1553154 | 1553240 | - | High |
| osa-MIR168b | MI0001116 | 1 | Chr2 | 27336428 | 27336533 | + | - |
| osa-MIR172a | MI0001139 | 3477 | Chr9 | 22881834 | 22881942 | + | - |
| osa-MIR172b | MI0001140 | 201 | Chr1 | 42923736 | 42923973 | - | - |
| osa-MIR172c | MI0001141 | 199 | Chr7 | 13111485 | 13111595 | - | - |
| osa-MIR166g | MI0001142 | 19256 | Chr12 | 18329367 | 18329511 | + | - |
| osa-MIR166h | MI0001143 | 17849 | Chr2 | 32435174 | 32435292 | - | High |
| osa-MIR166i | MI0001144 | 443 | Chr3 | 25294953 | 25295097 | + | - |
| osa-MIR408 | MI0001149 | 581 | Chr1 | 12301661 | 12301873 | + | High |
| osa-MIR172d | MI0001154 | 3505 | Chr2 | 35143537 | 35143666 | - | High |
| osa-MIR167j | MI0001156 | 56523 | Chr1 | 32686068 | 32686227 | - | - |
| osa-MIR166m | MI0001157 | 17946 | Chr8 | 23045356 | 23045555 | + | - |
| osa-MIR166j | MI0001158 | 19511 | None | None | - | ||
| osa-MIR437 | MI0001688 | 83 | Chr2 | 17050336 | 17050548 | - | - |
| osa-MIR396e | MI0001703 | 1338 | Chr4 | 34436820 | 34437003 | + | High |
| osa-MIR444a | MI0001719 | 1059 | None | None | High | ||
| osa-MIR528 | MI0003201 | 4611 | Chr3 | 1667328 | 1667415 | + | - |
| osa-MIR529a | MI0003202 | 331 | Chr2 | 16227805 | 16227903 | + | - |
| osa-MIR395m | MI0005084 | 17 | Chr4 | 32621993 | 32622112 | + | - |
| osa-MIR395n | MI0005085 | 33 | Chr4 | 32622243 | 32622308 | + | - |
| osa-MIR395o | MI0005086 | 1 | Chr4 | 32622381 | 32622449 | + | - |
| osa-MIR395p | MI0005087 | 21 | Chr4 | 32622525 | 32622592 | + | - |
| osa-MIR395q | MI0005088 | 21 | Chr4 | 32622668 | 32622735 | + | - |
| osa-MIR395v | MI0005090 | 1 | Chr9 | 6606575 | 6606643 | - | - |
| osa-MIR395w | MI0005091 | 0 | Chr9 | 6606291 | 6606359 | - | - |
| osa-MIR395r | MI0005092 | 17 | None | None | - | ||
| osa-MIR529b | MI0005804 | 306 | Chr4 | 15883024 | 15883161 | + | - |
| tae-MIR159b | MI0006171 | 704970 | None | None | - | ||
| tae-MIR167a | MI0006174 | 5585 | None | None | - | ||
| tae-MIR399 | MI0006176 | 140 | 1A | 229092696 | 229092821 | - | - |
| tae-MIR408 | MI0006177 | 90 | None | None | - | ||
| tae-MIR444a | MI0006178 | 92 | None | None | - | ||
| osa-MIR1432 | MI0006972 | 629 | Chr7 | 23401702 | 23401810 | - | - |
| osa-MIR444b | MI0006974 | 2333 | None | None | - | ||
| osa-MIR444c | MI0006975 | 4181 | None | None | - | ||
| osa-MIR444d | MI0006976 | 455 | None | None | - | ||
| osa-MIR444e | MI0006977 | 891 | None | None | - | ||
| osa-MIR444f | MI0006978 | 120 | None | None | - | ||
| osa-MIR1848 | MI0008225 | 3 | Chr4 | 18131807 | 18131869 | + | - |
| osa-MIR1858a | MI0008240 | 0 | Chr9 | 13536611 | 13536810 | + | - |
| osa-MIR1858b | MI0008241 | 0 | Chr9 | 13194040 | 13194233 | + | - |
| osa-MIR1862a | MI0008261 | 108 | Chr1 | 26192308 | 26192395 | + | - |
| osa-MIR1862b | MI0008262 | 113 | Chr8 | 8341200 | 8341398 | - | - |
| osa-MIR1862c | MI0008263 | 78 | Chr10 | 16093884 | 16093972 | + | - |
| osa-MIR1871 | MI0008274 | 135 | Chr6 | 13330464 | 13330598 | + | - |
| osa-MIR1862d | MI0008279 | 2670 | Chr10 | 4833611 | 4833760 | + | - |
| osa-MIR1862e | MI0008282 | 1340 | Chr11 | 2523232 | 2523324 | + | - |
| osa-MIR827 | MI0010490 | 478 | None | None | - | ||
| osa-MIR396f | MI0010563 | 1410 | Chr2 | 35636546 | 35636721 | - | High |
| osa-MIR396g | MI0013047 | 1122 | Chr6 | 5300630 | 5300810 | - | - |
| osa-MIR396h | MI0013048 | 1122 | Chr2 | 32841661 | 32841801 | + | - |
| osa-MIR396d | MI0013049 | 1542 | None | None | - | ||
| hvu-MIR156a | MI0016449 | None | None | None | - | ||
| tae-MIR156 | MI0016450 | 418 | None | None | - | ||
| hvu-MIR159b | MI0016451 | None | None | None | - | ||
| hvu-MIR166a | MI0016455 | None | None | None | - | ||
| tae-MIR167b | MI0016456 | 6 | None | None | - | ||
| hvu-MIR168 | MI0016457 | None | None | None | - | ||
| tae-MIR395a | MI0016463 | 34 | None | None | - | ||
| tae-MIR395b | MI0016464 | 36 | None | None | - | ||
| hvu-MIR397a | MI0016465 | None | None | None | - | ||
| tae-MIR398 | MI0016466 | 8629 | 3B | 662632381 | 662632500 | + | High |
| tae-MIR444b | MI0016467 | 91 | None | None | - | ||
| osa-MIR395x | MI0013350 | 1 | Chr4 | 32623067 | 32623162 | + | - |
| osa-MIR395y | MI0013351 | 25 | Chr8 | 3299815 | 3299924 | + | - |
| osa-MIR1862f | MI0017248 | 880 | None | None | - | ||
| osa-MIR1862g | MI0017249 | 977 | Chr4 | 20340401 | 20340523 | - | - |
| hvu-MIR166c | MI0018212 | None | None | None | - | ||
| tae-MIR396 | MI0030381 | 115 | None | None | - | ||
| tae-MIR167c | MI0030399 | 6035 | 6D | 53810988 | 53811134 | + | High |
| tae-MIR397 | MI0030405 | 404 | 6A | 120354266 | 120354358 | - | High |
| hvu-MIR397b | MI0030545 | None | None | None | - | ||
| hvu-MIR156b | MI0030546 | None | None | None | - |