Stem-loop osa-MIR162b

Accession

MI0001102

Description

Oryza sativa osa-MIR162b precursor miRNA

Literature search

26 open access papers mention osa-MIR162b
(42 sentences)

Sequence

63 reads, 44 reads per million, 2 experiments

ugggugaugccugggcgcagugguuuaucgaucucuucccugccuugugcugcuccgaucgaugcccgugcugauucuugauaauauacaacgcaggaaucgaUCGAUAAGCCUCUGCAUCCAGaucucacuuu
.((((((...(((((.((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))))).)))).)))))...)))))).

Structure

u      ugc     c    u            uc    c   c     -cugc  --c     au  c 
 ggguga   cuggg gcag gguuuaucgauc  uucc ugc uugug     uc   gaucg  gc c
 ||||||   ||||| |||| ||||||||||||  |||| ||| |||||     ||   |||||  ||  
 uucacu   GACCU CGUC CCGAAUAGCUag  aagg acg aacau     ag   uuagu  cg g
u      cua     A    U            cu    -   c     auaau  uuc     --  u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR162 family [1]. It is predicted to target mRNAs coding for DICER-LIKE 1 (DL1) proteins.

Genome context

Chr4: 24405899-24406032 [+]

Mature osa-miR162b

• Accession: MIMAT0001032
• Description: Oryza sativa osa-miR162b mature miRNA
• Sequence: 104 - UCGAUAAGCCUCUGCAUCCAG - 124
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799