Stem-loop osa-MIR399a

Accession

MI0001053

Description

Oryza sativa osa-MIR399a precursor miRNA

Literature search

60 open access papers mention osa-MIR399a
(245 sentences)

Sequence

cugugaauuacagggcaguucaccuuuggcacaagggcaagcaguagaaaccaugcgugcuugcuagagcuggaaaugaugcugguagcauugcaugguucagggaucacagaucucgUGCCAAAGGAGAAUUGCCCUGcgauuuuguc
....(((((.(((((((((((.((((((((((...(((((((((((.......))).)))))))).((((((....(((((((...)))))))..)))))).((((((...)))))))))))))))).))))))))))).)))))....

Structure

cugu     a           a          aagggcaagcaguagaaaccaugcgugcuugcua      gaaa       g 
    gaauu cagggcaguuc ccuuuggcac                                  gagcug    ugaugcu  
    ||||| ||||||||||| ||||||||||                                  ||||||    ||||||| g
    uuuag GUCCCGUUAAG GGAAACCGUg                                  cuuggu    guuacga  
cugu     c           A          ------------------cucuagacacuaggga      --ac       u 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

Chr1: 30478636-30478784 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR399a

Mature osa-miR399a

• Accession: MIMAT0000984
• Description: Oryza sativa osa-miR399a mature miRNA
• Sequence: 119 - UGCCAAAGGAGAAUUGCCCUG - 139
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799