Stem-loop osa-MIR167d

Accession

MI0001109

Description

Oryza sativa osa-MIR167d precursor miRNA

Literature search

83 open access papers mention osa-MIR167d
(258 sentences)

Sequence

81255 reads, 56522 reads per million, 2 experiments

cauuaggagcUGAAGCUGCCAGCAUGAUCUGaugagugcuuauuaggugagggcagaauugacugccaaaacaaagaucaGAUCAUGCUGUGCAGUUUCAUCugcuugug
(((.((.((.(((((((((((((((((((((((...(((((((...)))))(((((......)))))....))...)))))))))))))).))))))))).)).)).)))

Structure

   u  g  c         -              gag  --------------------     u 
cau ag ag UGAAGCUGC CAGCAUGAUCUGau   ug                    cuuau  
||| || || ||||||||| ||||||||||||||   ||                    ||||| a
gug uc uC ACUUUGACG GUCGUACUAGacua   ac                    gagug  
   u  g  U         U              gaa  aaaaccgucaguuaagacgg     g 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

Chr7: 4166295-4166404 [-]

Mature osa-miR167d-5p

• Accession: MIMAT0001039
• Description: Oryza sativa osa-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: not_experimental

Mature osa-miR167d-3p

• Accession: MIMAT0022872
• Description: Oryza sativa osa-miR167d-3p mature miRNA
• Sequence: 81 - GAUCAUGCUGUGCAGUUUCAUC - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176