miRBase entry: bmo-mir-2763

Stem-loop bmo-mir-2763


Accession
MI0012317
Description
Bombyx mori bmo-mir-2763 precursor miRNA
Gene family
MIPF0001437; mir-2763

Literature search
2 open access papers mention bmo-mir-2763
(7 sentences)

Sequence

17 reads, 4 reads per million, 2 experiments
ggcaauguacUGCAAAGUAGUGAACAUAAUUUAUcgugagauuuauuauuagaUAUUAUGCUCAUUUCUUUGGAUauguuguacg
.((((((((.(.(((((.(((((.((((((.....((((......)))).....)))))).))))).))))).)))))))))...

Structure
--g        c G     U     A      UUAUc    ga 
   gcaaugua U CAAAG AGUGA CAUAAU     guga  u
   |||||||| | ||||| ||||| ||||||     ||||   
   uguuguaU A GUUUC UUACU GUAUUA     uauu  u
gca        - G     U     C      Uagau    au 


Annotation confidence Not enough data
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Genome context
NW_004581731.1: 1485728-1485812 [+]

Database links

Mature bmo-miR-2763-5p

Accession MIMAT0013637
Description Bombyx mori bmo-miR-2763-5p mature miRNA
Sequence 11 - UGCAAAGUAGUGAACAUAAUUUAU - 34
Evidence experimental
Illumina [1-2], SOLID [3]

Mature bmo-miR-2763-3p

Accession MIMAT0013638
Description Bombyx mori bmo-miR-2763-3p mature miRNA
Sequence 54 - UAUUAUGCUCAUUUCUUUGGAU - 75
Evidence experimental
Illumina [1-2], SOLID [3]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  3. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52