miRBase entry: bmo-mir-2778d

Stem-loop bmo-mir-2778d


Accession
MI0012349
Description
Bombyx mori bmo-mir-2778d precursor miRNA
Gene family
MIPF0000827; mir-2778


Sequence

1606 reads, 290 reads per million, 3 experiments
cacggcaaaaGUUUUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUACGCAAAAAACAAUUuugacgugag
((((.(((((..((((((((.(((.((((..((........)).)))).))).))))))))...))))).))))..

Structure
--    g     -GU        A   C    Ac  uuu 
  cacg caaaa   UUUUUUGC UAU CUGC  ag   c
  |||| |||||   |||||||| ||| ||||  ||    
  gugc guuUU   AAAAAACG AUG GACg  uc   a
ga    a     AAC        C   A    -c  uug 


Annotation confidence High
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Genome context
NW_004617724.1: 662-737 [+]

Database links

Mature bmo-miR-2778d-5p

Accession MIMAT0013673
Description Bombyx mori bmo-miR-2778d-5p mature miRNA
Sequence 11 - GUUUUUUUGCAUAUCCUGCA - 30
Evidence experimental
Illumina [1], SOLID [2]

Mature bmo-miR-2778d-3p

Accession MIMAT0013674
Description Bombyx mori bmo-miR-2778d-3p mature miRNA
Sequence 46 - CAGAGUACGCAAAAAACAAUU - 66
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415