miRBase entry: bmo-mir-2733e-2

Stem-loop bmo-mir-2733e-2


Accession
MI0012303
Description
Bombyx mori bmo-mir-2733e-2 precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
2 open access papers mention bmo-mir-2733e-2
(5 sentences)

Sequence

11 reads, 4 reads per million, 1 experiments
uuugcuggacugucuauaaugucuuucaacaauagcuauuacuucuccagaagacauucacauucugUCACUGGGAAUGUAAUAGCUAUuuccaaaauu
.(((..((((..........))))..))).(((((((((((((((.((((..((((.........)))).))))))).)))))))))))).........

Structure
uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
                              aauagcuauuac uuc ccag  gaca   a
                              |||||||||||| ||| ||||  ||||   c
                              uUAUCGAUAAUG AAG GGUC  CUgu   a
---------------------uuaaaaccu            U   -    -A    cuu 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 342566-342664 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from bmo-mir-2733e-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733e

Accession MIMAT0013617
Description Bombyx mori bmo-miR-2733e mature miRNA
Sequence 68 - UCACUGGGAAUGUAAUAGCUAU - 89
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415