miRBase entry: bmo-mir-279d

Stem-loop bmo-mir-279d


Accession
MI0012297
Description
Bombyx mori bmo-mir-279d precursor miRNA
Gene family
MIPF0000184; mir-279

Literature search
8 open access papers mention bmo-mir-279d
(13 sentences)

Sequence

594 reads, 110 reads per million, 3 experiments
uuccucagacGAUGAGUGACCGUUUAGUUCAAguugucaauucuUGACUAGAUUUUCACUUAUCCUcugcgggcac
.(((.((((.(((((((((..(((((((.((((.........)))))))))))..))))))))).)))).)))...

Structure
--u   u    c         CC       U    uug 
   ucc caga GAUGAGUGA  GUUUAGU CAAg   u
   ||| |||| |||||||||  ||||||| ||||   c
   ggg gucU CUAUUCACU  UAGAUCA GUuc   a
cac   c    C         UU       -    uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004582019.1: 739120-739195 [+]

Database links

Mature bmo-miR-279d-5p

Accession MIMAT0013606
Description Bombyx mori bmo-miR-279d-5p mature miRNA
Sequence 11 - GAUGAGUGACCGUUUAGUUCAA - 32
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-279d-3p

Accession MIMAT0013607
Description Bombyx mori bmo-miR-279d-3p mature miRNA
Sequence 45 - UGACUAGAUUUUCACUUAUCCU - 66
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415