miRBase entry: bmo-mir-11

Stem-loop bmo-mir-11


Accession
MI0012294
Description
Bombyx mori bmo-mir-11 precursor miRNA
Gene family
MIPF0000252; mir-11

Literature search
1 open access papers mention bmo-mir-11
(1 sentences)

Sequence

6279 reads, 1093 reads per million, 3 experiments
guuuuguggcUAGCACUCGACAUGUGACCUGUguucgguaaucaCAUCACAGUCAGAGUUCUAGCUacacggcgcg
(((.(((((((((.(((((((.(((((..((((.........)))))))))))).)))).))))))))).)))...

Structure
---   u         C    -   A     CC    uuc 
   guu uguggcUAG ACUC GAC UGUGA  UGUg   g
   ||| ||||||||| |||| ||| |||||  ||||   g
   cgg acaUCGAUC UGAG CUG ACACU  ACac   u
gcg   c         U    A   -     --    uaa 


Annotation confidence Not enough data
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Genome context
NW_004581691.1: 1165065-1165140 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-11
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-11-5p

Accession MIMAT0013601
Description Bombyx mori bmo-miR-11-5p mature miRNA
Sequence 11 - UAGCACUCGACAUGUGACCUGU - 32
Evidence experimental
Illumina [1], SOLID [2]

Mature bmo-miR-11-3p

Accession MIMAT0013602
Description Bombyx mori bmo-miR-11-3p mature miRNA
Sequence 45 - CAUCACAGUCAGAGUUCUAGCU - 66
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415