miRBase entry: bmo-mir-316

Stem-loop bmo-mir-316


Accession
MI0012292
Description
Bombyx mori bmo-mir-316 precursor miRNA
Gene family
MIPF0000254; mir-316

Literature search
2 open access papers mention bmo-mir-316
(3 sentences)

Sequence

35 reads, 10 reads per million, 2 experiments
ugcauaaauuUGUCUUUUUCCGCUUUGCUGCUGauuuuuuucguacgucaACGGCAAAGUGAAAAGGUCUCCuuuaugagaa
..((((((...(.(((((((.(((((((((.((((...........)))).)))))))))))))))).)...))))))....

Structure
--ug      uuU U       C         C    uuuu 
    cauaaa   G CUUUUUC GCUUUGCUG UGau    u
    ||||||   | ||||||| ||||||||| ||||    u
    guauuu   C GGAAAAG UGAAACGGC acug    c
aaga      CCU U       -         A    caug 


Annotation confidence Not enough data
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Genome context
NW_004582031.1: 2958961-2959042 [+]

Database links

Mature bmo-miR-316-5p

Accession MIMAT0013597
Description Bombyx mori bmo-miR-316-5p mature miRNA
Sequence 11 - UGUCUUUUUCCGCUUUGCUGCUG - 33
Evidence experimental
Illumina [1], SOLID [2]

Mature bmo-miR-316-3p

Accession MIMAT0013598
Description Bombyx mori bmo-miR-316-3p mature miRNA
Sequence 51 - ACGGCAAAGUGAAAAGGUCUCC - 72
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415