miRBase entry: bmo-bantam

Stem-loop bmo-bantam


Accession
MI0008350
Description
Bombyx mori bmo-bantam precursor miRNA
Gene family
MIPF0000153; bantam

Literature search
12 open access papers mention bmo-bantam
(40 sentences)

Sequence

12945 reads, 2175 reads per million, 3 experiments
uaaaaggaacuacgaaaCUGGUUUUCAUAAUGAUUUGACAgauuguuuuguauucUGAGAUCAUUGUGAAAGCUAAUUuuguuccuggua
....((((((...((((.((((((((((((((((((..((((...........)))))))))))))))))))))).))))))))))....

Structure
uaaa      uac    C                  GA    uugu 
    aggaac   gaaa UGGUUUUCAUAAUGAUUU  CAga    u
    ||||||   |||| ||||||||||||||||||  ||||    u
    uccuug   uuUU AUCGAAAGUGUUACUAGA  GUcu    u
augg      ---    A                  --    uaug 


Annotation confidence Not enough data
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Genome context
NW_004582023.1: 2305314-2305403 [+]

Database links

Mature bmo-bantam-5p

Accession MIMAT0015278
Description Bombyx mori bmo-bantam-5p mature miRNA
Sequence 18 - CUGGUUUUCAUAAUGAUUUGACA - 40
Evidence experimental
Illumina [3]

Mature bmo-bantam-3p

Accession MIMAT0007907
Description Bombyx mori bmo-bantam-3p mature miRNA
Sequence 56 - UGAGAUCAUUGUGAAAGCUAAUU - 78
Evidence experimental
Northern [1], RT-PCR [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148