miRBase entry: bmo-mir-281

Stem-loop bmo-mir-281


Accession
MI0008348
Description
Bombyx mori bmo-mir-281 precursor miRNA
Gene family
MIPF0000087; mir-46

Literature search
6 open access papers mention bmo-mir-281
(21 sentences)

Sequence

35119 reads, 6348 reads per million, 3 experiments
ucuguuaaugAAGAGAGCUAUCCGUCGACAGUauugcugauaaacACUGUCAUGGAGUUGCUCUCUUuaugaacgga
((((((.(((((((((((..(((((.((((((.((.......)).)))))))))))...))))))))))).))))))

Structure
      a           -UA     C      a  gc 
ucuguu augAAGAGAGC   UCCGU GACAGU uu  u
|||||| |||||||||||   ||||| |||||| ||  g
aggcaa uauUUCUCUCG   AGGUA CUGUCA aa  a
      g           UUG     -      c  au 


Annotation confidence High
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Genome context
NW_004582034.1: 1683515-1683591 [+]

Database links

Mature bmo-miR-281-5p

Accession MIMAT0007904
Description Bombyx mori bmo-miR-281-5p mature miRNA
Sequence 11 - AAGAGAGCUAUCCGUCGACAGU - 32
Evidence experimental
Northern [1], RT-PCR [2], Illumina [3]
Database links

Mature bmo-miR-281-3p

Accession MIMAT0007905
Description Bombyx mori bmo-miR-281-3p mature miRNA
Sequence 46 - ACUGUCAUGGAGUUGCUCUCUU - 67
Evidence experimental
Northern [1], RT-PCR [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148