miRBase entry: bmo-mir-210

Stem-loop bmo-mir-210


Accession
MI0008347
Description
Bombyx mori bmo-mir-210 precursor miRNA
Gene family
MIPF0000086; mir-210

Literature search
2 open access papers mention bmo-mir-210
(3 sentences)

Sequence

6 reads, 2 reads per million, 1 experiments
aaugaaguccaaagcagcugcuggccacugcacaagauuagucaaguuuauacucUUGUGCGUGUGACAGCGGCUauugcgggcauuucauu
((((((((((..((.((((((((..((((((((((((.((..........)).))))))))).))).)))))))).))..))))..))))))

Structure
      --    aa  c        gc   -         u  guca 
aaugaa  gucc  ag agcugcug  cac ugcacaaga ua    a
||||||  ||||  || ||||||||  ||| ||||||||| ||     
uuacuu  cggg  uu UCGGCGAC  GUG GCGUGUUcu au    g
      ua    cg  a        -A   U         c  auuu 


Annotation confidence Not enough data
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Genome context
NW_004582008.1: 4476417-4476508 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-210
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-210

Accession MIMAT0007903
Description Bombyx mori bmo-miR-210 mature miRNA
Sequence 56 - UUGUGCGUGUGACAGCGGCU - 75
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148