miRBase entry: bmo-mir-13a

Stem-loop bmo-mir-13a


Accession
MI0008341
Description
Bombyx mori bmo-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
6 open access papers mention bmo-mir-13a
(23 sentences)

Sequence

110 reads, 25 reads per million, 3 experiments
gauaaucucgauCCUGUCAAAGCGGCGGUGAAAugucuccucccuuucaUAUCACAGCCACUUUGAUGUGgucgguuua
.......((((((.((((((((.(((.((((.(((............))).)))).))).)))))))).))))))....

Structure
gauaauc      C        C   G    A   ucucc 
       ucgauC UGUCAAAG GGC GUGA Aug     u
       |||||| |||||||| ||| |||| |||      
       ggcugG GUAGUUUC CCG CACU Uac     c
---auuu      U        A   A    A   uuucc 


Annotation confidence Not enough data
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Genome context
NW_004582015.1: 7692416-7692494 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-13a-5p

Accession MIMAT0007896
Description Bombyx mori bmo-miR-13a-5p mature miRNA
Sequence 13 - CCUGUCAAAGCGGCGGUGAAA - 33
Evidence experimental
Northern [1]

Mature bmo-miR-13a-3p

Accession MIMAT0007897
Description Bombyx mori bmo-miR-13a-3p mature miRNA
Sequence 50 - UAUCACAGCCACUUUGAUGUG - 70
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148