miRBase entry: bmo-mir-2b

Stem-loop bmo-mir-2b


Accession
MI0008340
Description
Bombyx mori bmo-mir-2b precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
11 open access papers mention bmo-mir-2b
(43 sentences)

Sequence

356 reads, 72 reads per million, 3 experiments
cgcuagaacUCGACAAGGUGGUUGUGACAUGggggcucaggaucaUAUCACAGCCAGCUUUGUUGAGUucucggcu
.((((((((((((((((((((((((((.((((..........)))).))))))))).)))))))))))))).))).

Structure
c   -              -         C    gggc 
 gcu agaacUCGACAAGG UGGUUGUGA AUGg    u
 ||| |||||||||||||| ||||||||| ||||     
 cgg ucuUGAGUUGUUUC ACCGACACU Uacu    c
u   c              G         A    agga 


Annotation confidence High
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Genome context
NW_004582015.1: 7692030-7692105 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2b-5p

Accession MIMAT0015273
Description Bombyx mori bmo-miR-2b-5p mature miRNA
Sequence 10 - UCGACAAGGUGGUUGUGACAUG - 31
Evidence experimental
Illumina [2]
Database links

Mature bmo-miR-2b-3p

Accession MIMAT0007895
Description Bombyx mori bmo-miR-2b-3p mature miRNA
Sequence 46 - UAUCACAGCCAGCUUUGUUGAGU - 68
Evidence experimental
Northern [1], Illumina [2]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148