miRBase entry: bmo-mir-2a-1

Stem-loop bmo-mir-2a-1


Accession
MI0008338
Description
Bombyx mori bmo-mir-2a-1 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
11 open access papers mention bmo-mir-2a-1
(86 sentences)

Sequence

2053 reads, 390 reads per million, 3 experiments
ggcggaauguagucgugGCAUCAAAGUCGGUUUGUCAUAggucauaacguaacUAUCACAGCCAGCUUUGAUGAGCacgacuucaucugu
.(((((.((.(((((((.(((((((((.((((.((.((((............)))).)))))).)))))))))..))))))).)))))))

Structure
g     a  u       -G         C    U  C    gucau 
 gcgga ug agucgug  CAUCAAAGU GGUU GU AUAg     a
 ||||| || |||||||  ||||||||| |||| || ||||      
 ugucu ac ucagcaC  GUAGUUUCG CCGA CA UAUc     a
-     -  u       GA         A    -  C    aaugc 


Annotation confidence High
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Genome context
NW_004582015.1: 7692561-7692650 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2a-1-5p

Accession MIMAT0015271
Description Bombyx mori bmo-miR-2a-1-5p mature miRNA
Sequence 18 - GCAUCAAAGUCGGUUUGUCAUA - 39
Evidence experimental
Illumina [3]
Database links

Mature bmo-miR-2a-3p

Accession MIMAT0007894
Description Bombyx mori bmo-miR-2a-3p mature miRNA
Sequence 54 - UAUCACAGCCAGCUUUGAUGAGC - 76
Evidence experimental
Northern [1], RT-PCR [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148