Stem-loop sequence bmo-mir-71

AccessionMI0005378 (change log)
DescriptionBombyx mori miR-71 stem-loop
Gene family MIPF0000278; mir-71
Literature search

6 open access papers mention bmo-mir-71
(13 sentences)

Stem-loop 
   --------------------gcaaga     ucua  u u         u           ugucccgu 
5'                           ugcuc    cc c ugaaagaca ggguagugaga        a
                             |||||    || | ||||||||| |||||||||||        c
3'                           acggg    gg g acuuucugu uccaucacucu        a
   uagaaggcuucggcucacuucuauaa     -uua  c u         -           uaaaaucu
Get sequence
Deep sequencing
312 reads, 0 reads per million, 3 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004582015.1: 7707526-7707644 [-]
intergenic
Database links

Mature sequence bmo-miR-71-5p

Accession MIMAT0004214
Previous IDsbmo-miR-71
Sequence

21 -  

ugaaagacauggguaguga

 - 39

Get sequence
Deep sequencing237 reads, 3 experiments
Evidence experimental; cloned [3], Illumina [4]
Database links

Mature sequence bmo-miR-71-3p

Accession MIMAT0015243
Previous IDsbmo-miR-71*
Sequence

60 -  

uucucacuaccuugucuuucau

 - 81

Get sequence
Deep sequencing71 reads, 3 experiments
Evidence experimental; Illumina [4]
Database links

References

1
PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2
PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3
PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
4
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).