miRBase entry: bmo-mir-71

Stem-loop bmo-mir-71


Accession
MI0005378
Description
Bombyx mori bmo-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
6 open access papers mention bmo-mir-71
(13 sentences)

Sequence

291 reads, 64 reads per million, 3 experiments
gcaagaugcucucuaccucuUGAAAGACAUGGGUAGUGAgaugucccguacaucuaaaaUUCUCACUACCUUGUCUUUCAUgcggauugggcaaauaucuucacucggcuucggaagau
......(((((....((.(.(((((((((.(((((((((((...................)))))))))))))))))))).).))...)))))...((((((.(........)))))))

Structure
--------------------gcaaga     ucua  u u         U           ugucccgu 
                          ugcuc    cc c UGAAAGACA GGGUAGUGAga        a
                          |||||    || | ||||||||| |||||||||||        c
                          acggg    gg g ACUUUCUGU UCCAUCACUCU        a
uagaaggcuucggcucacuucuauaa     -uua  c U         -           Uaaaaucu 


Annotation confidence High
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Genome context
NW_004582015.1: 7707526-7707644 [-]

Database links

Mature bmo-miR-71-5p

Accession MIMAT0004214
Description Bombyx mori bmo-miR-71-5p mature miRNA
Sequence 21 - UGAAAGACAUGGGUAGUGA - 39
Evidence experimental
cloned [3], Illumina [4]
Database links

Mature bmo-miR-71-3p

Accession MIMAT0015243
Description Bombyx mori bmo-miR-71-3p mature miRNA
Sequence 60 - UUCUCACUACCUUGUCUUUCAU - 81
Evidence experimental
Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  4. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997