miRBase entry: bmo-mir-31

Stem-loop bmo-mir-31


Accession
MI0005377
Description
Bombyx mori bmo-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
5 open access papers mention bmo-mir-31
(80 sentences)

Sequence

16636 reads, 3150 reads per million, 3 experiments
gucgagccgguggcugggaaGGCAAGAAGUCGGCAUAGCUGuuugaauaagauacacGGCUGUGUCACUUCGAGCCAGCucaauccgccggcuuucuucaauuucaagauuugcggaugcu
...((((((((((.((((..(((..(((((.(((((((((((.............))))))))))))))))..)))..))))..))))))))))(((.(((.........))).)))....

Structure
------------------------guc          -c    aa   AA     C           uugaa 
                           gagccggugg  uggg  GGC  GAAGU GGCAUAGCUGu     u
                           ||||||||||  ||||  |||  ||||| |||||||||||     a
                           uucggccgcc  acuC  CCG  CUUCA CUGUGUCGGca     a
ucguaggcguuuagaacuuuaacuucu          ua    GA   AG     -           cauag 


Annotation confidence High
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Genome context
NW_004581778.1: 423738-423858 [+]

Database links

Mature bmo-miR-31-5p

Accession MIMAT0004213
Description Bombyx mori bmo-miR-31-5p mature miRNA
Sequence 21 - GGCAAGAAGUCGGCAUAGCUG - 41
Evidence experimental
Northern [2], cloned [3], RT-PCR [4], Illumina [5]
Database links

Mature bmo-miR-31-3p

Accession MIMAT0015242
Description Bombyx mori bmo-miR-31-3p mature miRNA
Sequence 58 - GGCUGUGUCACUUCGAGCCAGC - 79
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  5. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997