miRBase entry: bmo-mir-307

Stem-loop bmo-mir-307


Accession
MI0004986
Description
Bombyx mori bmo-mir-307 precursor miRNA
Gene family
MIPF0000293; mir-67

Literature search
5 open access papers mention bmo-mir-307
(14 sentences)

Sequence

56 reads, 16 reads per million, 3 experiments
agcucguucccgguuACUCACUCAACCUGGGUGUGAUGugugcacucguugcucggcccaUCACAACCUCCUUGAGUGAGcgaucgucuaugagcc
.((((((...(((((.(((((((((...((.(((((((.(((((.....)))...)).))))))).))...))))))))).)))))...)))))).

Structure
a      ucc     A         CCU  G       u  ---   c 
 gcucgu   cgguu CUCACUCAA   GG UGUGAUG gu   gca u
 ||||||   ||||| |||||||||   || ||||||| ||   ||| c
 cgagua   gcuag GAGUGAGUU   CC ACACUac cg   cgu g
c      ucu     c         CCU  A       c  gcu   u 


Annotation confidence Not enough data
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Genome context
NW_004582026.1: 4749629-4749724 [-]

Database links

Mature bmo-miR-307-5p

Accession MIMAT0015237
Description Bombyx mori bmo-miR-307-5p mature miRNA
Sequence 16 - ACUCACUCAACCUGGGUGUGAUG - 38
Evidence experimental
Illumina [4]

Mature bmo-miR-307-3p

Accession MIMAT0004208
Description Bombyx mori bmo-miR-307-3p mature miRNA
Sequence 61 - UCACAACCUCCUUGAGUGAG - 80
Evidence experimental
RT-PCR [3], Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148