miRBase entry: bmo-mir-277

Stem-loop bmo-mir-277


Accession
MI0004981
Description
Bombyx mori bmo-mir-277 precursor miRNA
Gene family
MIPF0000156; mir-277

Literature search
5 open access papers mention bmo-mir-277
(32 sentences)

Sequence

3111 reads, 538 reads per million, 3 experiments
uugauuacgccucgggguUCGUGCCAGGAGUGCGUUUGCaaagaggccgacauguuugcguuauugcaauguuaacacugUAAAUGCACUAUCUGGUACGACAucccggggcguguagcaac
.....(((((((((((((((((((((((((((((((((((.....(..(((((...((((....)))))))))..)..)))))))))))).)))))))))).))))))))))))).......

Structure
--uugau             -          -            aagag cc     guu    u 
       uacgccucggggu UCGUGCCAGG AGUGCGUUUGCa     g  gacau   ugcg u
       ||||||||||||| |||||||||| ||||||||||||     |  |||||   ||||  
       gugcggggcccuA AGCAUGGUCU UCACGUAAAUgu     c  uugua   acgu a
caacgau             C          A            ---ca aa     ---    u 


Annotation confidence High
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Genome context
NW_004581681.1: 3821386-3821507 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-277
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-277-5p

Accession MIMAT0015233
Description Bombyx mori bmo-miR-277-5p mature miRNA
Sequence 19 - UCGUGCCAGGAGUGCGUUUGC - 39
Evidence experimental
Illumina [4]
Database links

Mature bmo-miR-277-3p

Accession MIMAT0004203
Description Bombyx mori bmo-miR-277-3p mature miRNA
Sequence 81 - UAAAUGCACUAUCUGGUACGACA - 103
Evidence experimental
Northern [2], RT-PCR [3], Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148