miRBase entry: bmo-mir-263a

Stem-loop bmo-mir-263a


Accession
MI0004978
Description
Bombyx mori bmo-mir-263a precursor miRNA
Gene family
MIPF0000122; mir-263

Literature search
7 open access papers mention bmo-mir-263a
(34 sentences)

Sequence

260149 reads, 55247 reads per million, 3 experiments
aucgauccaagcacaggcAAUGGCACUGGAAGAAUUCACggguucaguuuauauauuccCGUGAUCUCUUAGUGGCAUCACuggugcaggacgac
.(((.(((..((((.((..(((.((((((.(((..(((((((...............)))))))))).)))))).)))..)).)))).)))))).

Structure
a   a   aa    a  cA   G      A   AU       uucagu 
 ucg ucc  gcac gg  AUG CACUGG AGA  UCACggg      u
 ||| |||  |||| ||  ||| |||||| |||  |||||||      u
 agc agg  cgug uC  UAC GUGAUU UCU  AGUGCcc      a
c   -   -a    g  AC   G      C   --       uuauau 


Annotation confidence High
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Genome context
NW_004582020.1: 2312197-2312291 [-]

Database links

Mature bmo-miR-263a-5p

Accession MIMAT0004200
Description Bombyx mori bmo-miR-263a-5p mature miRNA
Sequence 19 - AAUGGCACUGGAAGAAUUCAC - 39
Evidence experimental
Northern [2], cloned [3], RT-PCR [4], Illumina [5]
Database links

Mature bmo-miR-263a-3p

Accession MIMAT0015230
Description Bombyx mori bmo-miR-263a-3p mature miRNA
Sequence 60 - CGUGAUCUCUUAGUGGCAUCAC - 81
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  5. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997