miRBase entry: bmo-mir-263b

Stem-loop bmo-mir-263b


Accession
MI0004977
Description
Bombyx mori bmo-mir-263b precursor miRNA
Gene family
MIPF0000122; mir-263

Literature search
7 open access papers mention bmo-mir-263b
(28 sentences)

Sequence

56 reads, 11 reads per million, 3 experiments
agccgacgcuguucCUUGGCACUGGGAGAAUUCACaggaguuguaauucauacccGUGAAUUUCCCGAUGCCUUAGcucagugugguca
.(((.((((((......((((.(((((((.(((((.((.((((.....)).)))))))))))))))).))))......)))))))))..

Structure
-a   g      uucCUU    C       A     a  a  -  u 
  gcc acgcug      GGCA UGGGAGA UUCAC gg gu ug a
  ||| ||||||      |||| ||||||| ||||| || || || a
  ugg ugugac      CCGU GCCCUUU AAGUG cc ca ac u
ac   -      ucGAUU    A       -     -  -  u  u 


Annotation confidence Not enough data
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Genome context
NW_004581687.1: 1534394-1534482 [+]

Database links

Mature bmo-miR-263b-5p

Accession MIMAT0004199
Description Bombyx mori bmo-miR-263b-5p mature miRNA
Sequence 15 - CUUGGCACUGGGAGAAUUCAC - 35
Evidence experimental
cloned [3], Illumina [4]
Database links

Mature bmo-miR-263b-3p

Accession MIMAT0015229
Description Bombyx mori bmo-miR-263b-3p mature miRNA
Sequence 56 - GUGAAUUUCCCGAUGCCUUAG - 76
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  4. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997