Stem-loop sequence bmo-mir-14

Accession

MI0004974 (change log)

Description

Bombyx mori miR-14 stem-loop

Gene family

MIPF0000182; mir-14

Literature search

9 open access papers mention bmo-mir-14
(56 sentences)

Stem-loop

   u       ug   c           uc   ga     uu 
5'  ugucauu  ugu ggggagagaaa  gac  ggcug  u
    |||||||  ||| |||||||||||  |||  |||||  u
3'  acaguga  aua ccucucucuuu  cug  cugau  a
   u       gu   u           uu   -a     uu 

Deep sequencing

2530 reads, 400 reads per million, 3 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582033.1: 1273977-1274056 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0004974

Mature sequence bmo-miR-14-5p

• Accession: MIMAT0015227
• Previous IDs: bmo-miR-14*
• Sequence: 14 - cggggagagaaaucgacgaggcu - 36
• Deep sequencing: 468 reads, 3 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00004EB27A_7091

Mature sequence bmo-miR-14-3p

• Accession: MIMAT0004196
• Previous IDs: bmo-miR-14
• Sequence: 48 - ucagucuuuuucucucuccua - 68
• Deep sequencing: 2062 reads, 3 experiments
• Evidence: experimental; Northern [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000300EB0_7091

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).