miRBase entry: bmo-mir-8

Stem-loop bmo-mir-8


Accession
MI0004971
Description
Bombyx mori bmo-mir-8 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
9 open access papers mention bmo-mir-8
(25 sentences)

Sequence

28252 reads, 4919 reads per million, 3 experiments
cacgacggaguaacgguucgCAUCUUACCGGGCAGCAUUAGAguccugucuauauuuucUAAUACUGUCAGGUAAAGAUGUCguccgcgcuccacguucguc
.((((((((((..(((..(((((((((((.(((((.(((((((.............))))))).))))).))).)))))).)).))).)))))..).)))).

Structure
c    - --     aa   uu  -      -   G     C       uccug 
 acga c  ggagu  cgg  cg CAUCUU ACC GGCAG AUUAGAg     u
 |||| |  |||||  |||  || |||||| ||| ||||| |||||||     c
 ugcu g  ccucg  gcc  gC GUAGAA UGG CUGUC UAAUcuu     u
c    u ca     -c   -u  U      A   A     A       uuaua 


Annotation confidence High
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Genome context
NW_004582017.1: 79866-79967 [+]

Database links

Mature bmo-miR-8-5p

Accession MIMAT0015224
Description Bombyx mori bmo-miR-8-5p mature miRNA
Sequence 21 - CAUCUUACCGGGCAGCAUUAGA - 42
Evidence experimental
Illumina [5]
Database links

Mature bmo-miR-8-3p

Accession MIMAT0004193
Description Bombyx mori bmo-miR-8-3p mature miRNA
Sequence 60 - UAAUACUGUCAGGUAAAGAUGUC - 82
Evidence experimental
Northern [2], cloned [3], RT-PCR [4], Illumina [5]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  5. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997