Stem-loop sequence bmo-mir-7

Accession

MI0004970 (change log)

Description

Bombyx mori miR-7 stem-loop

Gene family

MIPF0000022; mir-7

Literature search

6 open access papers mention bmo-mir-7
(16 sentences)

Stem-loop

   c   -    g     u  a   c         --    -   uu 
5'  gcu ucgu uugua gg aga uagugauuu  uguu guu  u
    ||| |||| ||||| || ||| |||||||||  |||| |||   
3'  cga agcg aacau cc ucu aucacuaaa  acaa cag  g
   a   c    a     -  g   a         ga    u   uu 

Deep sequencing

4066 reads, 667 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582035.1: 2817062-2817146 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-7

• bmo-mir-2758: NW_004582035.1: 2816104-2816179 [+]
• bmo-mir-7: NW_004582035.1: 2817062-2817146 [+]

Database links

• miRBase Tracker:MI0004970

Mature sequence bmo-miR-7-5p

• Accession: MIMAT0004192
• Previous IDs: bmo-miR-7
• Sequence: 15 - uggaagacuagugauuuuguugu - 37
• Deep sequencing: 4062 reads, 3 experiments
• Evidence: experimental; cloned [3], RT-PCR [4], Illumina [5]
• Database links:
  • RNAcentral:URS0000591950_7091

Mature sequence bmo-miR-7-3p

• Accession: MIMAT0015223
• Previous IDs: bmo-miR-7*
• Sequence: 52 - aagaaaucacuaaucugccua - 72
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Illumina [5]

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
4. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
5. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).