Stem-loop pde-MIR947

Accession

MI0022103

Description

Pinus densata pde-MIR947 precursor miRNA

Literature search

1 open access papers mention pde-MIR947
(1 sentences)

Sequence

acgccuaaggcgcagcagcagauucugauagaagacucaggcaaagcauuuguuguuggcagguugaaugcuuucggcagaaccaccaauaacaagggggggcgccuggugucuugCAUCGGAAUCUGUUACUGUUUCcuaggcgu
(((((((.((.((((.(((((((((((((..(((((((((((......(((((((((((..((((...((((...)))).)))).))))))))))).......)))))).)))))..))))))))))))).))))..)))))))))

Structure

       a  -c    c             ag     -      -aaagca           ca    gaa    u 
acgccua gg  gcag agcagauucugau  aagac ucaggc       uuuguuguugg  gguu   ugcu  
||||||| ||  |||| |||||||||||||  ||||| ||||||       |||||||||||  ||||   |||| u
ugcggau cC  UGUC UUGUCUAAGGCUA  uucug gguccg       gaacaauaacc  ccaa   acgg  
       -  UU    A             Cg     u      cgggggg           -a    --g    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR947

• Accession: MIMAT0025339
• Description: Pinus densata pde-miR947 mature miRNA
• Sequence: 117 - CAUCGGAAUCUGUUACUGUUUC - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132