Stem-loop pde-MIR946

Accession

MI0022102

Description

Pinus densata pde-MIR946 precursor miRNA

Literature search

1 open access papers mention pde-MIR946
(3 sentences)

Sequence

cagaguguauaguuguggauacagaaggguuaguaaacgguagaaaacccauuuauuguauaucauuggcuguucgagauuaagcaccuguaauucgauggccauacucauuaaauggguugccuguuugcucuguacCAGCCCUUCUCCUAUCCACAAuuguacuaguuug
((((.((((((((((((((((.((((((((((((((((((.....((((((((((.((..((....(((((((.((((.(((........))))))))))))))))..)).))))))))))..))))))))).......)))))))))..))))))))))))))).).))))

Structure

    g -               -c         -------         uagaa          u  ua  ucau       u    a   agc 
caga u guauaguuguggaua  agaaggguu       aguaaacgg     aacccauuua ug  ua    uggcugu cgag uua   a
|||| | |||||||||||||||  |||||||||       |||||||||     |||||||||| ||  ||    ||||||| |||| |||    
guuu a cauguuAACACCUAU  UCUUCCCGA       ucguuuguc     uuggguaaau ac  au    accggua gcuu aau   c
    g u               CC         Ccauguc         ---cg          u  uc  ----       -    -   guc 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR946

• Accession: MIMAT0025338
• Description: Pinus densata pde-miR946 mature miRNA
• Sequence: 139 - CAGCCCUUCUCCUAUCCACAA - 159
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132