Search results

mir-6 family (RF00143)

Summary

This family consists of the microRNA (miRNA) precursor mir-6 which appears to be Drosophila specific. Animal miRNAs are transcribed as ~70nt precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA. This family represents the microRNA (miRNA) precursor mir-6 imported from miRBase [3].

There are 39 hairpins in the mir-6 family

Name	Accession	RPM	Chromosome	Start	End	Strand	Confidence
dme-mir-6-1	MI0000124	1126	chr2R	19661003	19661084	-	High
dme-mir-6-2	MI0000125	1086	chr2R	19660869	19660942	-	High
dme-mir-6-3	MI0000126	1200	chr2R	19660716	19660795	-	High
dps-mir-6-1	MI0001299	-	ref\|NC_046680.1\|	16471735	16471814	-	-
dps-mir-6-3	MI0001300	-	ref\|NC_046680.1\|	16471441	16471520	-	-
dps-mir-6-2	MI0001301	-	ref\|NC_046680.1\|	16471584	16471666	-	High
dan-mir-6-1	MI0008999	-	ref\|NW_001939294.1\|	9731820	9731887	+	-
dan-mir-6-3	MI0009010	-	ref\|NW_001939294.1\|	9732122	9732197	+	-
dan-mir-6-2	MI0009015	-	ref\|NW_001939294.1\|	9731963	9732046	+	-
der-mir-6-3	MI0009042	-	scaffold_4845	9748475	9748554	-	-
der-mir-6-2	MI0009048	-	scaffold_4845	9748628	9748700	-	-
der-mir-6-1	MI0009051	-	scaffold_4845	9748765	9748835	-	-
dgr-mir-6-2	MI0009111	-	scaffold_15112	2108086	2108164	-	-
dgr-mir-6-4	MI0009114	-	scaffold_5621	3398	3467	+	-
dgr-mir-6-6	MI0009130	-	scaffold_5621	3701	3774	+	-
dgr-mir-6-1	MI0009139	-	scaffold_15112	2108232	2108301	-	-
dgr-mir-6-5	MI0009148	-	scaffold_5621	3535	3613	+	-
dgr-mir-6-3	MI0009158	-	scaffold_15112	2107923	2107996	-	-
dmo-mir-6-1	MI0009189	-	ref\|NW_001979114.1\|	20936315	20936380	-	-
dmo-mir-6-3	MI0009226	-	ref\|NW_001979114.1\|	20935959	20936036	-	-
dmo-mir-6-2	MI0009232	-	ref\|NW_001979114.1\|	20936137	20936217	-	-
dpe-mir-6-3	MI0009261	-	scaffold_2	8906643	8906725	+	-
dpe-mir-6-1	MI0009317	-	scaffold_2	8906500	8906568	+	-
dpe-mir-6-2	MI0009322	-	scaffold_2	8906789	8906868	+	-
dse-mir-6-1	MI0009327	-	scaffold_1	13063246	13063316	-	-
dse-mir-6-2	MI0009403	-	scaffold_1	13063107	13063180	-	-
dse-mir-6-3	MI0009404	-	scaffold_1	13062954	13063033	-	-
dsi-mir-6-1	MI0009452	-	ref\|NT_479534.1\|	16150860	16150930	-	-
dsi-mir-6-3	MI0009467	-	ref\|NT_479534.1\|	16150565	16150644	-	-
dsi-mir-6-2	MI0009473	-	ref\|NT_479534.1\|	16150718	16150791	-	-
dvi-mir-6-2	MI0009490	-	scaffold_12875	4112784	4112863	+	-
dvi-mir-6-3	MI0009511	-	scaffold_12875	4112960	4113032	+	-
dvi-mir-6-1	MI0009537	-	scaffold_12875	4112632	4112701	+	-
dwi-mir-6-3	MI0009588	-	scf2_1100000004514	1651001	1651076	-	-
dwi-mir-6-2	MI0009609	-	scf2_1100000004514	1651147	1651240	-	-
dwi-mir-6-1	MI0009611	-	scf2_1100000004514	1651330	1651398	-	-
dya-mir-6-3	MI0009650	-	chr2R	13624489	13624568	+	-
dya-mir-6-1	MI0009671	-	chr2R	13624206	13624276	+	-
dya-mir-6-2	MI0009694	-	chr2R	13624342	13624415	+	-