Stem-loop sequence osa-MIR5079b

Accession

MI0026007 (change log)

Description

Oryza sativa miR5079b stem-loop

Gene family

MIPF0001742; MIR5079

Literature search

1 open access papers mention osa-MIR5079b
(3 sentences)

Stem-loop

   --u     auaa   g       u     gg     auc  u       agguuuacauaguuaugguucauuuacauuacccaucuaaaugauuacauaacauaaaaccuuaaugaaauggaaaaaacuuccauuuuuguguuugauuugagaaccccuugaacgccuucucaaaggguucucaaaaauucgagauagaucuaa 
5'    uucuu    uuu gaucugu auuuu  uauca   ua uaggaau                                                                                                                                                            u
      |||||    ||| ||||||| |||||  |||||   || |||||||                                                                                                                                                            u
3'    gagaa    aaa uuagaca uagaa  auggu   au auccuua                                                                                                                                                            a
   cuu     --ag   a       -     aa     --c  u       gccauaaauaggucuaaaacaagagagcgauaggcaacugucccaucuccgagacaauagguuaauaauaggauuuauccuaaaaaaaagaagaugaucaggcgagauauaagguaucaccuuuaugauuuuuuaagucuuuuuucauuuucucag 

Confidence

Annotation confidence: not enough data

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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

• Coordinates (MSU7): Chr10: 10915695-10916100 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026007

Mature sequence osa-miR5079b

• Accession: MIMAT0031376
• Sequence: 11 - uuuggaucuguuauuuugguau - 32
• Evidence: not experimental

References

1. PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).