Stem-loop pde-MIR952b

Accession

MI0022109

Description

Pinus densata pde-MIR952b precursor miRNA

Gene family

MIPF0000426; MIR952

Literature search

1 open access papers mention pde-MIR952b
(2 sentences)

Sequence

gcgagcuaucgaaggagagaaccaguggcguauugAACAGAGCAUGCCAUUGGUGgaguaaguacguccagggacgaaacagaauuaauuuuuuugauuaacauuuuauuaaccuccaacucugccuuggccuauugcaguuccugaaggucacaucgacuggggcgugauacaaggcguagucggcuggcugcugccaccguugggacucucccaaccuauucucaucuacaacguuaaaaaguuacuuacauuguugcagccgagaauaaaaugggaagacuccaaagggucgcaccaaccagccaauugcgcuuuguaucagcgcgccaacuggugugagcuuugggaauugccauacgccaagccagacuugcaugcuaguaaaacauuauucgaaauuacuucuauuuuguuuguugacauacuuccuccgccaaugacacgcucaguucaauuugcugaugguuc
.(((....))).......((((((..((((.(((((((.((((.((.(((((((((((.(((((.(((.(.((((((((.((((.(((((((...((.(((..((((((((.(...(((.((((.((((((.(((.(((((((((((((.((((((((..(((.(((((((((((((((((((.((((((.((.(((.(((.((.(((.(((((((...(((((((..((.(((((..................))))).))..)))))))...)))).))).))).)).))).))).)).)))))).)))))))))))))))).))).)))..)))))))).))))))))))))).))).)))))).)))).)))...).))))))))..))).))))))))).)))).)))))))).).))).))))).))))))))))).)).)))).))))))).))))..))))))

Structure

gcgagcuaucgaaggaga      gu    u       A    A  C           u     c   c g        c    u       uuu  u   ca        a cuc   c    c      c   u             g        ac   g   -                c      c  c   c   g  g   c   -    acc       au  a     uuaaaaag 
                  gaacca  ggcg auugAAC GAGC UG CAUUGGUGgag aagua guc a ggacgaaa agaa uaauuuu   ga uaa  uuuuauua c   caa ucug cuuggc uau gcaguuccugaag ucacaucg  ugg gcg ugauacaaggcguagu ggcugg ug ugc acc uu gga ucu ccca   uauucuc  cu caacg        u
                  ||||||  |||| ||||||| |||| || ||||||||||| ||||| ||| | |||||||| |||| |||||||   || |||  |||||||| |   ||| |||| |||||| ||| ||||||||||||| ||||||||  ||| ||| |||||||||||||||| |||||| || ||| ||| || ||| ||| ||||   |||||||  || |||||         
                  cuuggu  ucgu uaacuug cucg ac guaaccgccuc uucau cag u uuuguuuu ucuu auuaaag   cu auu  aaaaugau g   guu agac gaaccg aua cguuaaggguuuc aguguggu  acc cgc acuauguuucgcguua ccgacc ac acg ugg aa ccu aga gggu   auaagag  ga guugu        u
------------------      ag    u       a    c  a           c     a   u g        a    c       ---  u   ac        c uac   c    c      c   c             g        ca   g   g                a      a  c   c   g  a   c   a    aaa       cc  c     uacauuca 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR952b

• Accession: MIMAT0025345
• Description: Pinus densata pde-miR952b mature miRNA
• Sequence: 36 - AACAGAGCAUGCCAUUGGUG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132