miRBase entry: pde-MIR950

Stem-loop pde-MIR950


Accession
MI0022106
Description
Pinus densata pde-MIR950 precursor miRNA
Gene family
MIPF0000407; MIR950

Literature search
1 open access papers mention pde-MIR950
(2 sentences)

Sequence

gaaggugaucuuuacaUCUGGUCCACGGUGGUUUAUuguucaucguuuguuuaugauaaaccaucgugccgcagaugauaagagcaccuuc
(((((((.((((..((((((...((((((((((((((((.((.....))...))))))))))))))))...))))))..)))).)))))))

Structure
       a    ua      GUC                --u  u 
gaaggug ucuu  caUCUG   CACGGUGGUUUAUugu   ca c
||||||| ||||  ||||||   ||||||||||||||||   || g
cuuccac agaa  guagac   gugcuaccaaauagua   gu u
       g    ua      gcc                uuu  u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature pde-miR950

Accession MIMAT0025342
Description Pinus densata pde-miR950 mature miRNA
Sequence 17 - UCUGGUCCACGGUGGUUUAU - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22480283
    Transcriptome-wide identification and characterization of miRNAs from Pinus densata
    Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
    BMC Genomics (2012) 13:132