Stem-loop pde-MIR482a

Accession

MI0022097

Description

Pinus densata pde-MIR482a precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

1 open access papers mention pde-MIR482a
(4 sentences)

Sequence

ugagaagugaagggauguguuuuguggaugggagucuugaggagugggagcauaggauaaggcugcuucauaucaccagUCUUUCCUACUCCUCCCAUUCCuauugccuucaccacacaucccuucccaa
......(.((((((((((((...(((((.((.(((....(((((((((((..(((((.(((((((...........))))))))))))...)))))))))))))).))))))).)))))))))))).)..

Structure

ugagaa u            uuu     u  g   cuug           -ca     u       cuuc 
      g gaagggaugugu   gugga gg agu    aggagugggag   uagga aaggcug    a
      | ||||||||||||   ||||| || |||    |||||||||||   ||||| |||||||    u
      c cuucccuacaca   cacuu cc uua    uCCUUACCCUC   AUCCU UUCUgac    a
----aa c            --c     -  g   ----           CUC     -       cacu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR482a

• Accession: MIMAT0025333
• Description: Pinus densata pde-miR482a mature miRNA
• Sequence: 80 - UCUUUCCUACUCCUCCCAUUCC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132