Stem-loop pde-MIR162

Accession

MI0022090

Description

Pinus densata pde-MIR162 precursor miRNA

Gene family

MIPF0000127; MIR162_1

Literature search

1 open access papers mention pde-MIR162
(6 sentences)

Sequence

gcgauuucagacgcuuggcagccuggaugcaaaggguuuaccgaccauguccacgggccgcugggucucggUCGAUAAACCUCUGCAUCCAGauuguuuggaaucuguugc
((((...((((..((.(((((.(((((((((..(((((((.(((((..(.((.(((....))))).)..))))).))))))).))))))))).))))).))..))))))))

Structure

    uuu    cg  u     c         aa       c     au u  a   g 
gcga   caga  cu ggcag cuggaugca  ggguuua cgacc  g cc cgg c
||||   ||||  || ||||| |||||||||  ||||||| |||||  | || |||  
cguu   gucu  gg uuguu GACCUACGU  UCCAAAU GCUgg  c gg guc c
    ---    aa  u     a         -C       A     cu u  -   g 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR162

• Accession: MIMAT0025326
• Description: Pinus densata pde-miR162 mature miRNA
• Sequence: 72 - UCGAUAAACCUCUGCAUCCAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132