Stem-loop pde-MIR159

Accession

MI0022089

Description

Pinus densata pde-MIR159 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention pde-MIR159
(4 sentences)

Sequence

uaagcgguagagcuccuuuuguaccaaucaaggacugugcaaaaaugauccgacugccgauuuaugcauccuucugcccugcgaguguucguuguuucaaguccgaauagauugcagguuagugguuugcagaagaccgauuucauugcagguuaguggugugcauaaggcgggaguuguauugauuuuguguuguccucgUUUGGUUUGAAGGGAGCUCUAcugggc
....(((((((((((((((((.(((((.(.(((((..(((((((.((((.(((((.(((..((((((((.((((((((((((((.((((((............))))))..)))))))..........)))))))((((...((......))....))))))))))))..))).))))).)))).)))))))..))))).).))))).)))))))))))))))))...

Structure

uaag                 u     u a     ug       a    c     g   au        ------------------------c       ----------       -g      uuguu 
    cgguagagcuccuuuug accaa c aggac  ugcaaaa ugau cgacu ccg  uuaugcau                         cuucugc          ccugcga  uguucg     u
    ||||||||||||||||| ||||| | |||||  ||||||| |||| ||||| |||  ||||||||                         |||||||          |||||||  ||||||      
    gucAUCUCGAGGGAAGU UGGUU g uccug  guguuuu guua guuga ggc  aauacgug                         gaagacg          ggacguu  auaagc     c
-cgg                 U     U c     uu       a    u     g   gg        uggugauuggacguuacuuuagcca       uuuggugauu       ag      cugaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR159

• Accession: MIMAT0025325
• Description: Pinus densata pde-miR159 mature miRNA
• Sequence: 202 - UUUGGUUUGAAGGGAGCUCUA - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132