miRBase entry: osa-MIR5824

Stem-loop osa-MIR5824


Accession
MI0019842
Description
Oryza sativa osa-MIR5824 precursor miRNA
Gene family
MIPF0000343; MIR806


Sequence

30 reads, 30 reads per million, 2 experiments
uuaauagauaacgcaauugacauuuuaucacacguuuaaucauucaucuuauuuaaaaaauuuacguaauuauaaucuauuuuauugugaguuguuuuaucacuuaaaguauuuuauucgugauucaaaucuuauguauuuauauaaaauuuuugaauaagaugaauAGUCUGAUAAGAAGUCAAUGGCGUuaucuauuaa
.(((((((((((((.((((((.((((((((.((........((((((((((((((((((.((((.((((..((((..(((((((..((((.........)))).)))))))..)))).(((((........)))))...)))).)))).)))))))))))))))))).)).)))))))).)))))).))))))))))))).

Structure
u             a      a        c  guuuaauc                  a    c    --------------------uu    uc       uu    guu 
 uaauagauaacgc auugac uuuuauca ac        auucaucuuauuuaaaaa uuua guaa                      auaa  uauuuua  guga   g
 ||||||||||||| |||||| |||||||| ||        |||||||||||||||||| |||| ||||                      ||||  |||||||  ||||   u
 auuaucuauUGCG UAACUG AGAAUAGU UG        uaaguagaauaaguuuuu aaau uauu                      uauu  augaaau  cacu   u
a             G      A        C  -------A                  a    a    uauguauucuaaacuuagugcu    uu       -u    auu 


Annotation confidence Not enough data
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Genome context
Chr1: 1761530-1761730 [-]

Database links

Mature osa-miR5824

Accession MIMAT0023297
Description Oryza sativa osa-miR5824 mature miRNA
Sequence 168 - AGUCUGAUAAGAAGUCAAUGGCGU - 191
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207