Stem-loop sequence osa-MIR5812

Accession

MI0019829 (change log)

Description

Oryza sativa miR5812 stem-loop

Literature search

1 open access papers mention osa-MIR5812
(2 sentences)

Stem-loop

        a    u          g      ug 
5' uagca cgau uuaagauugu gcaaua  u
   ||||| |||| |||||||||| ||||||   
3' aucgu guua aauuuuaaua cguuau  a
        a    c          a      cu 

Deep sequencing

5 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 11846139-11846200 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019829

Mature sequence osa-miR5812

• Accession: MIMAT0023284
• Sequence: 2 - agcaacgauuuuaagauuguggca - 25
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).