Stem-loop sequence osa-MIR5076

Accession

MI0017955 (change log)

Description

Oryza sativa miR5076 stem-loop

Literature search

1 open access papers mention osa-MIR5076
(4 sentences)

Stem-loop

   c    -gauccc     u  a       au    -      -uuca  uac   u ua       ---u           a  --ua   g   -        c  uu cca      uu 
5'  aucu       agccu cu uugcuuu  uuuc agucaa     uc   uug g  agaagag    agaguuugagu uc    gca ggu ugaguaua au  g   aauaau  u
    ||||       ||||| || |||||||  |||| ||||||     ||   ||| |  |||||||    ||||||||||| ||    ||| ||| |||||||| ||  |   ||||||   
3'  uaga       uugga ga gacgagg  aaag ucaguu     ag   gac c  ucuuuuc    uuuuaagcuua ag    cgu uca auuuauau ua  c   uuauug  g
   -    aaaaagu     c  -       gu    c      cucuc  uac   - uc       cagu           -  uaac   a   u        c  uu aag      uc 

Deep sequencing

17 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

• Coordinates (MSU7): Chr1: 43208622-43208850 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017955

Mature sequence osa-miR5076

• Accession: MIMAT0020564
• Sequence: 198 - gaaaugggagcagagcagguuu - 219
• Deep sequencing: 14 reads, 2 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000043F8BA_39947

References

1. PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).