Stem-loop osa-MIR5073

Accession

MI0017946

Description

Oryza sativa osa-MIR5073 precursor miRNA

Literature search

1 open access papers mention osa-MIR5073
(3 sentences)

Sequence

auaagaauuaGUUUGGUGAAUCGGAAACUAUUUuucaauuuuauagaaaaaguccauguaauuuuaugaucaauaauaguuuucguuuuccccaaaccgucuaaacu
...(((....((((((.(((.(((((((((((........((((((((.............)))))))).....)))))))))))..))).))))))..))).....

Structure

--aua   auua      U   -U           Uuucaauu        aaagu 
     aga    GUUUGG GAA  CGGAAACUAUU        uuauagaa     c
     |||    |||||| |||  |||||||||||        ||||||||     c
     ucu    caaacc cuu  gcuuuugauaa        aguauuuu     a
ucaaa   --gc      c   uu           ---uaacu        aaugu 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr8: 19020495-19020601 [+]

Mature osa-miR5073

• Accession: MIMAT0020555
• Description: Oryza sativa osa-miR5073 mature miRNA
• Sequence: 11 - GUUUGGUGAAUCGGAAACUAUUU - 33
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129