miRBase entry: bmo-mir-3396

Stem-loop bmo-mir-3396


Accession
MI0014459
Description
Bombyx mori bmo-mir-3396 precursor miRNA


Sequence

10 reads, 4 reads per million, 3 experiments
uucggauccuucUCCAGUUUCUAUUUCACGGACGUCAggcgauuuaaugcggcuucaaaguuguugggcaucuucggguucuccucuccucuccccgcagugcggucucguagcggccgucgggucguugcuggguggaauccc
...((((((...((((((.........((((((..((.(((.......((((((....)))))).(((.......(((....))).......))))))..))..))).)))(((((((....))))))))))))).)).)))).

Structure
uuc    -  uuc      ---------UUCUAUUUC   -   GU  -g   auuuaaugcggcuucaaaguuguugg 
   ggau cc   UCCAGU                  ACG GAC  CA  gcg                          g
   |||| ||   ||||||                  ||| |||  ||  |||                           
   ccua gg   gggucg                  ugc cug  gu  cgc                          c
--c    a  --u      uugcugggcugccggcga   u   gc  ga   cccucuccucuccucuugggcuucua 


Annotation confidence Not enough data
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Genome context
NW_004581756.1: 232166-232309 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bmo-mir-3396
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3396

Accession MIMAT0015600
Description Bombyx mori bmo-miR-3396 mature miRNA
Sequence 13 - UCCAGUUUCUAUUUCACGGACGUCA - 37
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415