Stem-loop bmo-mir-2733a-3

Accession

MI0014453

Description

Bombyx mori bmo-mir-2733a-3 precursor miRNA

Gene family

MIPF0000766; mir-2733

Literature search

1 open access papers mention bmo-mir-2733a-3
(4 sentences)

Sequence

54 reads, 1 reads per million, 3 experiments

guugauauguggaaaauucuaUCACUGGGUGCAUGAUGAUUGUgguagagagaucaucucaucacgccgccaucacauguaacaucucuucuauuucucucuaauacAGUCAUCACACUCUCAGUUGAUAuguguaacauuauaucac
..(((((((((....((..((((((((((.(..(((((((((((.((((((((...............((........))...............)))))))).)))))))))))..).))))).))))).))....)).))))))).

Structure

gu       -  gaaa  uc     -     U CA           g        ucaucucaucacgcc  cau 
  ugauaug ug    au  uaUCA CUGGG G  UGAUGAUUGUg uagagaga               gc   c
  ||||||| ||    ||  ||||| ||||| |  ||||||||||| ||||||||               ||    
  acuauau ac    ug  AUAGU GACUC C  ACUACUGAcau aucucucu               ug   a
-c       u  aaug  -u     U     U AC           a        uuaucuucucuacaa  uac 

Annotation confidence Not enough data

Genome context

NW_004581684.1: 346598-346745 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from bmo-mir-2733a-3

Mature bmo-miR-2733a-5p

• Accession: MIMAT0012611
• Description: Bombyx mori bmo-miR-2733a-5p mature miRNA
• Sequence: 22 - UCACUGGGUGCAUGAUGAUUGU - 43
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-2733a-3p

• Accession: MIMAT0015593
• Description: Bombyx mori bmo-miR-2733a-3p mature miRNA
• Sequence: 108 - AGUCAUCACACUCUCAGUUGAUA - 130
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415