miRBase entry: bmo-mir-3389

Stem-loop bmo-mir-3389


Accession
MI0014450
Description
Bombyx mori bmo-mir-3389 precursor miRNA
Gene family
MIPF0001581; mir-3389


Sequence

40 reads, 7 reads per million, 3 experiments
aggggaccccgaaugacgccccgcaggacccagUCGUAGCCGAUGUUCCACAGCAGggggcccaggacagacCCCUGCGGAACACCGCGCUCGacggggaagcggaacaucgcccca
.((((....(((.((.....((((....(((.((((.(((((.((((((...(((((((............))))))))))))).)).))))))))))...))))..))))))))).

Structure
a    accc   a  acgcc    agga   a    U   -  A      ACA       gccca 
 gggg    cga ug     ccgc    ccc gUCG AGC CG UGUUCC   GCAGggg     g
 ||||    ||| ||     ||||    ||| |||| ||| || ||||||   |||||||      
 cccc    gcu ac     ggcg    ggg caGC UCG GC ACAAGG   CGUCCCc     g
a    ----   -  ---aa    -aag   -    -   C  C      ---       agaca 


Annotation confidence Not enough data
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Genome context
NW_004587066.1: 348-464 [+]

Database links

Mature bmo-miR-3389-5p

Accession MIMAT0015589
Description Bombyx mori bmo-miR-3389-5p mature miRNA
Sequence 34 - UCGUAGCCGAUGUUCCACAGCAG - 56
Evidence experimental
SOLID [1]

Mature bmo-miR-3389-3p

Accession MIMAT0015590
Description Bombyx mori bmo-miR-3389-3p mature miRNA
Sequence 73 - CCCUGCGGAACACCGCGCUCG - 93
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415