miRBase entry: bmo-mir-3239

Stem-loop bmo-mir-3239


Accession
MI0014294
Description
Bombyx mori bmo-mir-3239 precursor miRNA


Sequence

3 reads, 1 reads per million, 3 experiments
auccguugugcuauaucgauaacuuugguuuucuguuggaucaccucguucuggauucgauccuUCAGAGAAAAAGAGAUUUUUAUuacacgaugu
...(((((((..(((..(((..((((..(((((((..(((((...((......))...)))))..)))))))..)))))))..)))..))))))).

Structure
auc       cu   uc   aa    gg       uu     acc  gu 
   cguugug  aua  gau  cuuu  uuuucug  ggauc   uc  u
   |||||||  |||  |||  ||||  |||||||  |||||   ||   
   guagcac  UAU  UUA  GAGA  AAGAGAC  ccuag   ag  c
--u       au   UU   --    AA       Uu     cuu  gu 


Annotation confidence Not enough data
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Genome context
NW_004581862.1: 4535-4630 [+]

Database links

Mature bmo-miR-3239

Accession MIMAT0015422
Description Bombyx mori bmo-miR-3239 mature miRNA
Sequence 65 - UCAGAGAAAAAGAGAUUUUUAU - 86
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415